Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1995 ATGGGTTACGTAGACGATCCGTATCGCGACGAGGAAGGAGAGCCCTTGATGGACTACGACGACGTTCAATCCGACCGCGAGCCCTCTCCGGAGCCGCACCACCAGCTCGGCGATTTCGAGGAGGACGTGGACGACTGGCGCGGCCGCGATCGGTCGCAGACGCCGGTGTACGACACGGATCCGGCGCGGTCGAAGCCGCGGAAGAGGCTGATCAAGAAGAGCGAGGCCGGGAAGCAGTCGGTGGCGCCGGAGCTCGAGGACGAGGACGAGGACGAGGAGGGGGGTTACGTTCCGGCGAGGACCGACGAGGGGGACgcgaggaagaggaagaaggggaAGGAGGGTGGGAGtgggaagaaggagaagaggcTGAAGGGGGAGAAGAGGTTTGGGAGCGGCGGGGGGAAGGGTGGGTCCAAATTTGGGGGTTCCAAGAAAGGGTTTGGAGGGAAAGCAGGGAAGGATCATGATGGGGAAGTTAAGGAGATGTGGGATACAATTGCCGGGGGAGATTCTGAGGATGATCAGGAGGGTGTCAGGAATGTGGATGATGACAACTTTATAGATGACACTGGAGTGGAACATCGTTTTTATGCTAGTGACAATGAACCACGTTCTCCTGGTGATGCCCCCCAGGCGGAGGAAGgtgaagaggatgaagaaatCAAGGATCTTTTCAAGATaggtaagaaaaagaagaagaatgagaGAAGTCCTGCAGAAATAGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAGGAGGATGCTGAACTTAATAGACAGGGGAAACCTGCCATTAATAAACTCAAGAAGTTGCCTCTTCTTACAGAAGTCCTCTCAAAGAAACAGCTTCAACTAGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCGCTTCCTGATGGAAGCTTGCCAAATATAAATATACGCATGGAAATTTTGAGGATTTTGAATGATTTTCCTATAGATCTTGAACAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGAAAGgtaattatgtttttatcgAAGTCTGATGAAGAAATTAGCGTAAATAGGAAACTAGCCAAGGAGCTGGTTGATAAGTGGAGCCGACCTATATTTAATAAGAGTACTCGGTTTGAAGACATGAGAAATGTGGAGGATGATAGAGTTCCTTTCAGGAGGCCATTGGTTAAAAAGCTGGCAAATAAAGCTGCAGGAATGGAATCTAGAGATAGTGATCTTGATTTGGAACTTTCACAGCCTAGGGCTGGACAGTCCTCTTCCAGGCAGCACGCATCAAGGCCGGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAATCTAAAATTGATCCAGAAGAAGTTAGAGCACGAGCAAAACAAGCTGCCCAAGATCAGCAGCGTATGAAGATGAATAAGAAATTGCAACAATTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCTACAAAACTTAGTGTGGAAGGTCGTGGTATGGTCAAATATTTGTAA 1533 0.4573 MGYVDDPYRDEEGEPLMDYDDVQSDREPSPEPHHQLGDFEEDVDDWRGRDRSQTPVYDTDPARSKPRKRLIKKSEAGKQSVAPELEDEDEDEEGGYVPARTDEGDARKRKKGKEGGSGKKEKRLKGEKRFGSGGGKGGSKFGGSKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDQEGVRNVDDDNFIDDTGVEHRFYASDNEPRSPGDAPQAEEGEEDEEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRMEILRILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPFRRPLVKKLANKAAGMESRDSDLDLELSQPRAGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKQAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1995 510 Coils Coil 246 266 - -
Ssu2g1995 510 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 295 383 IPR035441 -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 469 494 - -
Ssu2g1995 510 Pfam TFIIS helical bundle-like domain 327 380 IPR017923 -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 427 442 - -
Ssu2g1995 510 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 239 386 IPR035441 -
Ssu2g1995 510 ProSiteProfiles TFIIS N-terminal domain profile. 300 383 IPR017923 -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 19 65 - -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 409 451 - -
Ssu2g1995 510 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 - -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 97 130 - -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 149 212 - -
Ssu2g1995 510 MobiDBLite consensus disorder prediction 1 221 - -
Ssu2g1995 510 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 IPR044204 GO:0009742|GO:0032784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu2g1995 Med26 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1995 K17498 - gmx:100801805 808.135