Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1985 ATGGGCAGCAGTGAGATGGATAAAGCCCCAAAAGAGAAGGAGTCAAAGACGCCGCCATCTACGTCACAGGAGCAGTCTTTAACCACCGGCACTGGAACAATTAATCCTGACTGGCCTGGCTTTCAGGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGcATATTATGCCTCCATATGGTACTCCACCACATCCCTATGTTGCAATGTACCCCCCTGGTGGTATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATACCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAGCCTCATGAGGTGAAGGAAAAGTTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACTGGGAAAAATAATGAACATGGGAAAACACCGGGTACATCTGCTAATGGAATTCATTCAAAGAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAAAATGACTCTCAAATGAAATCAGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTCGGCATATAATCCTCAAAATGGGGGACTAAATACACCTCATACAGTGGTCAATCAAACTATGTCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTGGTCCCACGACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCGGCACTTGCCAGAAAGGTTCCATCTACTGCAGTTGCTGGAGGGATGGTTACTACTGGATCACGGGATAGTGTGCAGTCTCAACTCTGGCTACAGGATGAAAGAGAGCTTAAACGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGTAAGCAGgccgAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTCCGGTTGGAAGTAAGTCGAATTAGGAGTGAGTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGGAGAGACTTGGGGAACTACCTGCGAATGATGATCAGCGTAGGTCTGGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGAGTGAGGCTGTGCAGGATGGTCATTAG 1236 0.4693 MGSSEMDKAPKEKESKTPPSTSQEQSLTTGTGTINPDWPGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAIPSPNGIAEASGNTPGSMEADGKPHEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGTSEGSDANSQNDSQMKSGGRQDSFEDEPSQNGSSAYNPQNGGLNTPHTVVNQTMSIIPISAGGAPGAVPGGPTTNLNIGMDYWGTPASSNIPALARKVPSTAVAGGMVTTGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRLEVSRIRSEYEQLLSENAALKERLGELPANDDQRRSGRNDQHVGNDTQQSGQSEAVQDGH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1985 411 MobiDBLite consensus disorder prediction 393 411 - -
Ssu2g1985 411 MobiDBLite consensus disorder prediction 113 228 - -
Ssu2g1985 411 Pfam bZIP transcription factor 306 368 IPR004827 GO:0003700|GO:0006355
Ssu2g1985 411 MobiDBLite consensus disorder prediction 308 330 - -
Ssu2g1985 411 Gene3D - 309 363 - -
Ssu2g1985 411 Pfam Disordered region downstream of MFMR 135 273 - -
Ssu2g1985 411 MobiDBLite consensus disorder prediction 373 411 - -
Ssu2g1985 411 MobiDBLite consensus disorder prediction 1 18 - -
Ssu2g1985 411 SUPERFAMILY Leucine zipper domain 309 365 IPR046347 GO:0003700|GO:0006355
Ssu2g1985 411 MobiDBLite consensus disorder prediction 146 228 - -
Ssu2g1985 411 Coils Coil 326 374 - -
Ssu2g1985 411 MobiDBLite consensus disorder prediction 127 141 - -
Ssu2g1985 411 CDD bZIP_plant_GBF1 311 361 IPR045314 GO:0003700|GO:0006355
Ssu2g1985 411 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 308 371 IPR004827 GO:0003700|GO:0006355
Ssu2g1985 411 MobiDBLite consensus disorder prediction 1 41 - -
Ssu2g1985 411 MobiDBLite consensus disorder prediction 376 392 - -
Ssu2g1985 411 SMART brlzneu 306 370 IPR004827 GO:0003700|GO:0006355
Ssu2g1985 411 MobiDBLite consensus disorder prediction 19 38 - -
Ssu2g1985 411 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 409 - -
Ssu2g1985 411 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Ssu2g1985 411 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 313 328 IPR004827 GO:0003700|GO:0006355
Ssu2g1985 411 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 409 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1985 Ssu-Chr2 72704675 72715440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1985 1 411 bZIP Transcription Factor Family AT2G35530 61.722 6.26e-168 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu2g1985 MFMR_assoc 5.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1985 K09060 - gmx:778122 733.791