Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1984 ATGGGGAAAGCTCCACGCCCATTTCCCCCAAATCcccctctctccctctctctttcctctactcCCTGCAATTCACTTCCATTCTCCAATCCCAATGGCACCAACAACGGACCCAGAACCAGAAGCCGAAGCGCTGCGCCTGAAGGCCATGGCGGAGTCCAAGTTCAAATCCTCCAACAACGCCAAATCCGCTCTGAAATACGCGAAGCGAGCGCAGCGTCTGTGGCCGCACCTCGCCGGCGTGTCGGAGACGGTGACCTCCCTCAGCGTCCTCGCCGCGGCGGACTGGTACAGCGTCCTCGGCTTGGAGCCTTCGCCAACAGCAGCGCCGTTCGGAGACAGTACAAGAAGCTCGCCCTGCTCCTCCACCCCGACAAGAATCCCCACGCGGCGTCCGAGGAGGCCTTCAAGCTCGTAGGCGAGGCCTTCCGCCTCCTCTCCGACAGGGCCCGCCGCCGGGAGTACGACGCCGAGCTCCGGCGTAGGATCGAGGCGGAGAGCCAGACCTTCTGGACCGCTTGCTCCACTTGCAGGCTCTTGCACCAGTTCCAGAGAAGGTACTTGGGTCATGAATTGGTTTGTCCAAGTTGTGAGAAGAGTTTTAAGGCCGTGGAAACGGTTCAgagtgatggtgatggtgatggtgatggagaTGGGGGAGTTAGGGTTAGGAGTAGGAGGTTGAAGTTGAGAGAGataaacaagaagaagaaaattgggGTGGAAGGGAAGGTGGGTAGTGAAAAAGGTGATGAAGTGGAGAATGAGAAGGAAGGGAAATTGAGGAAGAGAATGCGTTCAGTTGGGGAGGTGTTGGAGAGGTCCAAACCTAGTAAGAGGGTTAAAACTGGGGAGGAAATGATGACATTGGCTGAATTTCAGAATGAGGTGAAGAGAAAGTTGCAGGGAAAAAAGTTGAaggaaaaggtaaaagaaaaggaaaaggaaaaggaaagggaaGAGGACAGAATTGAAAAGAGAAGCAACCGAGGGGAGAGGCGGCGGGGATTGAAAAATGACGGAGGTTTAGAGGTTGGAGAAGTGAGGAGTTTGAAGAAGAGTGTGAAGCTTGCAATTGAGGAGAAGCGTGAGGCTTTGGAGAAGAGGAAGGGGTTGAGAATTGAGAAGCGTAGGTATTGTTCTGGTGGAGGGGAATTGGAAAATATGGCGGTGGTGGATTcggatttttatgattttgacaAAGATAGAGTGGAGAGGAGCTTTAAGAAAGGCCAAGTGTGGGCAGTGTATGACGATGATGATGGAATGCCCAGGCATTATGGCTTGATTGATGAAACCGTTTCAGTGAATCCTTTTGAAGTGAGAATAAGTTGGTTGGATGTACAGAACAGTGGGGATGGAAAGATTGTTAGTAGGGAGAAAATGGGGTTTCATGTACCTTGGGGGAGATTTAAGGTTGCCAGGAAGGCTTCTGTAAATTCAGTAAATATCTTTTCTCATGTTGTGGATTGTGACCGGGCAGCGCGTGAGGTTTACAAAATTTACCCCAAGAAGGGCTCGGTATGGGCTCTTTATGGCAAGGGAAGTATTGATGCAGATGGGAGGAATGCTGCAGATGAGGGCAAGAGATGCTATGACATTGTTGTATTTTGA 1614 0.4727 MGKAPRPFPPNPPLSLSLSSTPCNSLPFSNPNGTNNGPRTRSRSAAPEGHGGVQVQILQQRQIRSEIREASAASVAAPRRRVGDGDLPQRPRRGGLVQRPRLGAFANSSAVRRQYKKLALLLHPDKNPHAASEEAFKLVGEAFRLLSDRARRREYDAELRRRIEAESQTFWTACSTCRLLHQFQRRYLGHELVCPSCEKSFKAVETVQSDGDGDGDGDGGVRVRSRRLKLREINKKKKIGVEGKVGSEKGDEVENEKEGKLRKRMRSVGEVLERSKPSKRVKTGEEMMTLAEFQNEVKRKLQGKKLKEKVKEKEKEKEREEDRIEKRSNRGERRRGLKNDGGLEVGEVRSLKKSVKLAIEEKREALEKRKGLRIEKRRYCSGGGELENMAVVDSDFYDFDKDRVERSFKKGQVWAVYDDDDGMPRHYGLIDETVSVNPFEVRISWLDVQNSGDGKIVSREKMGFHVPWGRFKVARKASVNSVNIFSHVVDCDRAAREVYKIYPKKGSVWALYGKGSIDADGRNAADEGKRCYDIVVF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1984 537 Gene3D DnaJ domain 101 177 IPR036869 -
Ssu2g1984 537 MobiDBLite consensus disorder prediction 1 16 - -
Ssu2g1984 537 SMART dnaj_3 102 151 IPR001623 -
Ssu2g1984 537 ProSiteProfiles dnaJ domain profile. 92 159 IPR001623 -
Ssu2g1984 537 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 104 537 - -
Ssu2g1984 537 Pfam Domain of unknown function (DUF3444) 388 536 IPR024593 -
Ssu2g1984 537 Coils Coil 348 375 - -
Ssu2g1984 537 MobiDBLite consensus disorder prediction 304 340 - -
Ssu2g1984 537 MobiDBLite consensus disorder prediction 244 283 - -
Ssu2g1984 537 PRINTS DnaJ domain signature 115 130 IPR001623 -
Ssu2g1984 537 PRINTS DnaJ domain signature 131 151 IPR001623 -
Ssu2g1984 537 PANTHER BNAC03G44070D PROTEIN 104 537 - -
Ssu2g1984 537 MobiDBLite consensus disorder prediction 17 42 - -
Ssu2g1984 537 MobiDBLite consensus disorder prediction 1 53 - -
Ssu2g1984 537 Pfam DnaJ domain 106 156 IPR001623 -
Ssu2g1984 537 MobiDBLite consensus disorder prediction 69 95 - -
Ssu2g1984 537 SUPERFAMILY Chaperone J-domain 105 160 IPR036869 -
Ssu2g1984 537 Coils Coil 303 330 - -
Ssu2g1984 537 CDD DnaJ 105 148 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1984 Ssu-Chr2 72679410 72681690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1984 111 208 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.579 2.03e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1984 - - gmx:100814434 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1984 2 72679410 72681690 Ssu2g1984 2 72679410 72681690 ECH
Ssu5g0784 5 20041690 20045284 Ssu2g1984 2 72679410 72681690 PCT