Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1975 ATGTATGGGGATTGCCAAGTTATGTCAAGTGTGGGAGGGAACGTAGTAGTGAACTCAGATTCCCTCTTCTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTTCAGCCTTTTCCTTCCATGaaagaagAAGATGGGATGTTGCGAGGGAAGGAAGAGATGGAAAGTGGATCAGGAAGTGAACAAGTTGAAGACAAGTCAGGGAACGAGCAAGAGAGTGAACAACCCACAAAGAAGAAACGTTATCACAGACACACCGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAGTGTCCTCACCCGGATGACAAGCAGAGGCTGAAACTGAGCCATGAATTGGGTCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGACCGGGCAGATAATGTCATACTTAGAGCCGAGAATGAGACTCTAAAGAGTGAGAACTTTCGATTGCAAGCAGCGCTGCGTAATGTTATCTGTCCCAATTGTGGTGGCCCATGCATAATGGGCGCTGATCTGGGCTTGGACGAACACCAACTTCGCATTGAAAATGCCCGGTTAAGAGAAGAgTTAGAACGCATGTGTTGTCTCACTTCAAGATACACTGGACGTCCAATCCAAGCAATGGCGGCAGGTCCTACTCTAATGGCCCCGTCATTGGATTTGGACATGAACATATACCCAAGGCACTTTGCGGATCCTATTGCTCCTTGCACGGAAATGATTCCTGTGCCAATGTTGCCTCCCCCCGAAGCTTCACCATTTGCAGAGGGTGGCTTCCTAATGGAAGAAGAGAAGTCTCTGGCCTTGGAGCTTGCGGCTTCTTCCATGGCTGAACTTGTGAAGATGTGTCAGACGAACGAGCCACTTTGGATCCGAAGCAGTGAGAGTGAAAGGGAAGTGCTCAATTTTGAAGAGCATGCAAGGATGTTTCCTTGGCCTCAGAATCTCAAACACCGAACTGAACTAAGGACAGAAGCTAGCCGTGACACAGCTATGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCTcaaaaatggATGGAATTGTTTCCTACAATCGTTTCTAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCCGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTCCATGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAACGCTGAGGAGGGAACCTGGGCAATTGTTGATTTTCCCGTTGATGACTTTCACCAAAATTTTCACCCTTCTTATCCCAGATACTGCAGGAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCTGCAACTATGTGTACACCGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGCGAGAGGGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACATGATGAAACTAACCCAAAGAATGATAAAAACGTTTAGCCTTAACATGAGCACCTCCGGTGGTCAATCATGGACAGCCATATCAGATTCACCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCTAATGGCGTGATTCTAAGTGCCGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGCCACAGATCTCAGatgGATGCTCTTTCCAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAATTGCATTTCCCTTCTTCGCATAAATGTAGCGAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCTGGAAGCTTAGTAGTGTACACCACCATCGACGTGGATTCCATCCAGCTAGCCATGAGCGGCGAGGACCCCTCTTGCATTGCCCTCCTTCCCCAAGGCTTCATGATGGTGCCAATGGTATCATCACCCAACGTTGACGCACCCGTCGAAGCCAACTCATCTGAGCCTCCATCAGGGTGCCTCCTAACCATGGGGCTCCAAGTTCTCGCAAGCACAATCCCTTCTGCAAAGCTCAACCTCTCGAGCGTGACGGCCATCAACAACCACCTTTGCAACACCTTGCACCAAATTGAAGCTGCACTTTCTGGCACTCTCCTTTGCGCTGAACCCACCACTAGTACTGCACCTCCCAAGCCCTGA 2352 0.4792 MYGDCQVMSSVGGNVVVNSDSLFSSSIQNSNFNFIPTMPFQPFPSMKEEDGMLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENETLKSENFRLQAALRNVICPNCGGPCIMGADLGLDEHQLRIENARLREELERMCCLTSRYTGRPIQAMAAGPTLMAPSLDLDMNIYPRHFADPIAPCTEMIPVPMLPPPEASPFAEGGFLMEEEKSLALELAASSMAELVKMCQTNEPLWIRSSESEREVLNFEEHARMFPWPQNLKHRTELRTEASRDTAMVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFHVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDDFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYTGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNMMKLTQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMMVPMVSSPNVDAPVEANSSEPPSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSGTLLCAEPTTSTAPPKP 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1975 783 Pfam START domain 285 509 IPR002913 GO:0008289
Ssu2g1975 783 CDD START_ArGLABRA2_like 279 508 - -
Ssu2g1975 783 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Ssu2g1975 783 SMART HOX_1 82 145 IPR001356 GO:0003677
Ssu2g1975 783 PANTHER - 60 773 - -
Ssu2g1975 783 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Ssu2g1975 783 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 773 IPR042160 -
Ssu2g1975 783 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Ssu2g1975 783 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Ssu2g1975 783 SUPERFAMILY Bet v1-like 527 762 - -
Ssu2g1975 783 SMART START_1 284 509 IPR002913 GO:0008289
Ssu2g1975 783 CDD homeodomain 84 142 IPR001356 GO:0003677
Ssu2g1975 783 Gene3D - 285 493 IPR023393 -
Ssu2g1975 783 SUPERFAMILY Bet v1-like 276 511 - -
Ssu2g1975 783 MobiDBLite consensus disorder prediction 53 84 - -
Ssu2g1975 783 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Ssu2g1975 783 MobiDBLite consensus disorder prediction 53 91 - -
Ssu2g1975 783 Gene3D - 69 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1975 Ssu-Chr2 72489500 72495270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1975 26 769 Homeobox Transcription Factor Family AT5G46880 59.148 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu2g1975 START 3.2e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1975 - - gmx:100812829 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1975 2 72489500 72495270 Ssu2g1975 2 72489500 72495270 ECH
Ssu2g1975 2 72489500 72495270 Ssu7g0757 7 15195242 15200101 ECH