Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1974 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGAAATGGGTTAGAATTTCTGAAGCGTAAAAGGCTTCAGCGTGCAAAATCTGTCACTTCCACCCAGACAAGTATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGCATGAGACTGCATGGTAATGCTAATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGATACAAATGACCTGGAATGGGCTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCGGAAGCTTCAAAATATGGTATATGCAAGATTATTTCTCCTTTGAGTGCTTCGGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAATTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTAACGTTTTTTATGAGTGGAAGaaattataCATTTCGCGATTTTGAGAAAATGGCAAATAAGGTATTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGACCTGCTTGGGAACAGCAAATGGAATTTGAAgAAACTTTCAAGGTTGCCCAAATCAATTTTACGGCTCTTGGAAACGTCAATTCCGGGAGTAACCGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAACTATCATCATTGTGGGGCATCAAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACACGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCTCCAAATATTTTGTTGGAGCATGAAGTCCCCGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTCGAGCATATCACGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGACTGGTTTCCTTTAGGGGCTGTTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCATACATGCTTGCAACTTGAAGATTCAGATCTTCCCTCTTCAGACTTGTTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGTTTCCAGCATTGTGCTCGGTGGTTCCTGATGAAATCAAGGGCATGTATAAGTGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAACCTTTGCAAACGTGACTGTTACATAGCTTATGTTGCTTGCAACTGTCACAGGCATCCTGTATGCCTACGTCATGATATTGATTCTCTTGACTTCATCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCCAAGATGTTTGAGCAGGAGGATGGGATATTGGATGAGATAAGTGACCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCAAGGCAAATGGATACGCTCCTTATTGTGAGCTAAAACTTGATTctgttattgaattttatacaaCTCCAGAGCACTCAACAAATAATCAAGAGTATAGTACACAAAATCAATCTGTCTTGGGACATTGCTCTGAAAATCATAAACCAGTGGTGTCTGAGGTTTCCTTTTCTTCTGCCACATCCGCTCTTTGCTCTCTTTCAGAATCTCTCGAGAGCTTTTCTGCTCCCAAAAATCAGGCTGAGGGGCATACTAACATCAATGTAGGTATTATTGATTTTGAAGAGTTTGGTGAAAGAATATCCAACAGTGCATGTGAATCTTCATTATCCCCTGCTGTGTATCATGAAAGCTCGGTTAAACCACAGGTTGATCTTCAGAGATTTGATACAAAGCCAATTGTGGACGAGAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGCTATGTCTTCAAAGCATACTGAGCAGCAGGGACTTAAACGACTGAAGAAAATCCTTCCTGAAGGAAAGAGTGGGCAACCAATGCATTTCAGCAGAACCAATGAATCAAGTTACAAATACAGTCACCCTGTTAACCATAATGGTCATACTGAAATTTCCTCCAGGGACAGATTTGCAAGGGTTAATGACATTCCCATTTCTATAAGATATAAGAAGTTAGGCAACGAGGAAATAAGTATGCAACGAGATCACCACCGGAGAGATAGGTTGCAGCAGATTGAGATTGGGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTTTAGGCTTAGAGAGCAGATTGAATTGA 2538 0.4086 MVERRVTLSKEVRNGLEFLKRKRLQRAKSVTSTQTSIANMMNRSGGDALRASASCGMRLHGNANVFSKRKVDKFDTNDLEWADKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDLLGNSKWNLKKLSRLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRVPLLPHEELLCKEAMLLHTCLQLEDSDLPSSDLFSHNSIKISFVNLMRFQHCARWFLMKSRACISVSSHSHGTILCNLCKRDCYIAYVACNCHRHPVCLRHDIDSLDFICGSKHTLYLREDIMDMEAAAKMFEQEDGILDEISDQNMYAYPLSNMFQRAKANGYAPYCELKLDSVIEFYTTPEHSTNNQEYSTQNQSVLGHCSENHKPVVSEVSFSSATSALCSLSESLESFSAPKNQAEGHTNINVGIIDFEEFGERISNSACESSLSPAVYHESSVKPQVDLQRFDTKPIVDESDDSDSEIFRVKRPSSLKAERRNMNDAMSSKHTEQQGLKRLKKILPEGKSGQPMHFSRTNESSYKYSHPVNHNGHTEISSRDRFARVNDIPISIRYKKLGNEEISMQRDHHRRDRLQQIEIGPKRLKVRGPSFLGLESRLN 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1974 845 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Ssu2g1974 845 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Ssu2g1974 845 MobiDBLite consensus disorder prediction 720 780 - -
Ssu2g1974 845 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 51 841 - -
Ssu2g1974 845 Pfam jmjN domain 89 121 IPR003349 -
Ssu2g1974 845 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 841 - -
Ssu2g1974 845 SMART JmjN_1 87 128 IPR003349 -
Ssu2g1974 845 MobiDBLite consensus disorder prediction 720 750 - -
Ssu2g1974 845 SMART cupin_9 232 405 IPR003347 -
Ssu2g1974 845 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Ssu2g1974 845 MobiDBLite consensus disorder prediction 757 778 - -
Ssu2g1974 845 Gene3D Cupin 88 440 - -
Ssu2g1974 845 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Ssu2g1974 845 Pfam C5HC2 zinc finger 485 536 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1974 Ssu-Chr2 72458137 72463845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1974 85 544 JUMONJI Transcription Factor Family AT2G34880 32.957 2.50e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu2g1974 JmjC 8e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1974 - - gmx:100798611 1549.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1974 2 72458137 72463845 Ssu2g1974 2 72458137 72463845 ECH