Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1973 ATGGAGCTATTCCCAGCACAACCAGACTTGTCCTTACAAATCAGCCCTCCAAACACCAAACCCACATCAAGTTGGAGGAGAAGCACAGAAGAAGACATGGATTTGGGGTTTTGGAAGAGAGCCCTGGACTCGAGAAACTCCCTATCATCAATGGCCAAACAAGACTCTCGCTTCGACCTCTCCCTCTGCAATCCAAAAGCCTCAGACTCCAACACCTCCAACCTCATTCACCACTTCCAAAACGGTGCCAATAATGCCAACAACCCCTTCCAACCCTTTCAGCAAAACCATTACTTCCACCAGCCACTGTTCCAGCCACAGCACCATCAAAGCCTAAGCCAAGACCTCGGGTTTCTCAGACCCATCAGAGGAATCCCAGTGTACCAAAACCCTCCCCCTATACCATTCACCCAACACCATCACCTCCCTCTAGAACCTTCCACCACCACCCCTTCTTCTATTATTTCCAACACAAACACTGGCTCCACCCCTTTCCACTCTCAGGCTCTTATGAGATCAAGGTTCTTGTCACGCTTCCCAGCTAAACGTAGCATGAGGGCTCCGAGGATGCGTTGGACTTCCACCCTCCACGCTCGCTTTGTTCATGCCGTTGAGCTCTTAGGTGGCCACGAAAGGGCTACGCCCAAATCAGTTCTGGAGCTAATGGATGTGAAGGATCTCACTTTGGCACACGTTAAGTCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGGGCGGCGGCTTCATCAGGGCAATCGGATGTGTATGATAATGGGTCGTCTGGAGATACTTCCGATGACTTAATGTTTGACATAAAATCCTCAAGAAGGTCTGATCTATCCATTAAGCAGGGAAGATCGAGTGTTAATCAAGATAAGGAATATCATGGTCTTTGGGGCAACTCCTCCAGGGAAGCTTGGTTGCATGGGAAGACAAAGGCTGATTCTGTTGGAAACGTGCCTTCTCTGGAGAAGGAAATGGATCCAAAGTGCCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCCTCAAATCTTTCAGGATCAAGCCCGAAGAAGCCTAATTTGGATTTGGAATTCAGCTTGGGCCAGCCACTTTAA 1107 0.4842 MELFPAQPDLSLQISPPNTKPTSSWRRSTEEDMDLGFWKRALDSRNSLSSMAKQDSRFDLSLCNPKASDSNTSNLIHHFQNGANNANNPFQPFQQNHYFHQPLFQPQHHQSLSQDLGFLRPIRGIPVYQNPPPIPFTQHHHLPLEPSTTTPSSIISNTNTGSTPFHSQALMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDLSIKQGRSSVNQDKEYHGLWGNSSREAWLHGKTKADSVGNVPSLEKEMDPKCLSYERISDGSSSSNLSGSSPKKPNLDLEFSLGQPL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1973 368 MobiDBLite consensus disorder prediction 246 270 - -
Ssu2g1973 368 SUPERFAMILY Homeodomain-like 185 241 IPR009057 -
Ssu2g1973 368 MobiDBLite consensus disorder prediction 246 271 - -
Ssu2g1973 368 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 367 IPR044847 GO:0000976|GO:0006355|GO:0010158
Ssu2g1973 368 MobiDBLite consensus disorder prediction 338 356 - -
Ssu2g1973 368 MobiDBLite consensus disorder prediction 315 368 - -
Ssu2g1973 368 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 367 - -
Ssu2g1973 368 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
Ssu2g1973 368 Gene3D - 187 244 - -
Ssu2g1973 368 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1973 Ssu-Chr2 72403773 72407982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1973 1 367 G2-like Transcription Factor Family AT4G17695 38.918 3.41e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g1973 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1973 - - gmx:100798081 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1973 2 72403773 72407982 Ssu2g1973 2 72403773 72407982 ECH