LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g1961	ATGACATTGGTTATCAGAGAGAGGAGACACAAACAAGCTCTAAGAGTTTCCTTACCAAAACCTCCTCCAATTCCATCAGCATCAGATTTCCCACATCAAATCCACATACCAGCAGTGTTGCCTTCCCCATCTTCCCATGTAGACTCTTCTCCAGGCATCATCAAGGACCTTTCGGACCTTGAGAAACTAGCAGTTCTTGGCCATGGAAATGGTGGCACAGTCTACAAAGTTTATCACAGGAAGAACTGTTCCCTTTATGCATTGAAAGTCCTACGCTTGAATGAGAATGGCATTGGCATCCGCCAACCCGCTACACTCGAGGCCGAGATTCTAAAACGAGTAGATTCGCCGTATATAGTAAGGTGTCACGCTGTTTTTGACAATGGTGGTAGCAGTAAAGGTGACAATGGAGGCGACATTAGCTTTGTTATGGAATACATGGAAGGAGGGTCCTTGCATGATGTGTTGCGAGAACACCGTAGGCTGCCGGAGGATGTGATCTCCGTGCTGGCTAAGCGTGTTTTGGAAGGGCTTAACTATTTGCACGGCATGCACATTGTGCACAGAGATATTAAGCCCTCAAACTTGCTTGTGAATGACAAGGGAGAGGTGAAGATTGCGGATTTTGGAGTGAGTCACGTGGTGGAAGGCAGGTTTGAAGGAAATGACTCCAATGCAGGCACGTGCGCCTACATGAGTCCAGAAAGAGTTGATCCAGAAAGATGGGGCGGTCAAGATGCAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTGGTAATGTTGGAATGCTTTTTGGGTCATTTTCCATTGATTGGTCCAGGGCAGAGAGCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGCTGGAGATGCCAGAGAAGGCATCACCCGAGTTCCAAAATTTTGTCAGGAGGTGTCTTGAGAAGAATTGGAGGAGCAGAGCAACAGTTTTAGAACTTCTTCACAACCCTTTTGTGAGCAGAAACTCTTGCTATTCCAGTAAAGGGCTTGGCGATTATGTTCTTCGGGGTTAA	1047	0.467	MTLVIRERRHKQALRVSLPKPPPIPSASDFPHQIHIPAVLPSPSSHVDSSPGIIKDLSDLEKLAVLGHGNGGTVYKVYHRKNCSLYALKVLRLNENGIGIRQPATLEAEILKRVDSPYIVRCHAVFDNGGSSKGDNGGDISFVMEYMEGGSLHDVLREHRRLPEDVISVLAKRVLEGLNYLHGMHIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRFEGNDSNAGTCAYMSPERVDPERWGGQDADEFAGDVWSMGVVMLECFLGHFPLIGPGQRADWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRSRATVLELLHNPFVSRNSCYSSKGLGDYVLRG	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g1961	348	CDD	PKc_MAPKK_plant_like	58	330	-	-
	Ssu2g1961	348	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	5	333	IPR045269	GO:0004674\|GO:0006914
	Ssu2g1961	348	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	186	198	IPR008271	GO:0004672\|GO:0006468
	Ssu2g1961	348	SMART	serkin_6	60	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g1961	348	Gene3D	Phosphorylase Kinase; domain 1	46	144	-	-
	Ssu2g1961	348	Gene3D	Transferase(Phosphotransferase) domain 1	145	342	-	-
	Ssu2g1961	348	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE	5	333	-	-
	Ssu2g1961	348	PRINTS	Tyrosine kinase catalytic domain signature	144	157	IPR001245	GO:0004672\|GO:0006468
	Ssu2g1961	348	PRINTS	Tyrosine kinase catalytic domain signature	180	198	IPR001245	GO:0004672\|GO:0006468
	Ssu2g1961	348	PRINTS	Tyrosine kinase catalytic domain signature	252	274	IPR001245	GO:0004672\|GO:0006468
	Ssu2g1961	348	ProSiteProfiles	Protein kinase domain profile.	60	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g1961	348	SUPERFAMILY	Protein kinase-like (PK-like)	58	332	IPR011009	-
	Ssu2g1961	348	Pfam	Protein kinase domain	61	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu2g1961	348	ProSitePatterns	Protein kinases ATP-binding region signature.	66	89	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g1961	Ssu-Chr2	72220882	72221928	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g1961	1	330	MAP Kinase Kinase Gene Family	AT1G32320	53.636	2.95e-108	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Ssu2g1961		Pkinase	9.7e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g1961	K20604		-	gmx:100817973	596.66