Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1960 ATGGAGGGCGGCGGGTCCACGCCGGCGGCGCCGATTCCGAACGCGAACGCGCCGCCGCCGTTTCTGAGCAAGACGTACGACATGGTGGAGGACCCTTCCACCGACGCGATCGTGTCGTGGAGCGCAACCAACAACAGCTTCGTGGTGTGGGACCCACCCGAATTCGCCCGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACGGTTTCAGGAAGGTCGATCCAGATCACTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGACTATAACACGGCGAAAACCTGCCCATGGTCATAATCATCAACAGGCTCAACAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGgcttaaaagagataagaatgTGCTCATGCAAGAGCTTGTGAGGTTGAGGCAGCAGCAACAGACCACTGATAGCCAGCTGCAAGCAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAGATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGACAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTCGGCTAAAGCAGGAAGGTATTGCTGAAACAGAGCAGGCTGCTGCTCCAGATGGACAAATTGTTAAATATCAACCTCTGATGAATGAAGCAGCAAAAGCCATGCTTAGGCAGATCATGAAATGGGATACTTCTCATGtagaatcttttaataaaaactctGATAACTATATGATTGGTGATGGTTTATCATCTTCCAGTGCAATGGACAGTGGCAGCTCTTCAAGCTGGACTTCTGGAGTAACTCTTCAAGAGGTCTCTCCAGCTGCGGTGCAGTCTACACACTTTCCAGCTGCACCCGGGACTCAAGGGCATGTCCCCTCAACTGTTAAACCTGAAATTTTATCTGTACCACAAGCAGTAGCTTCTGAAAAAGTTACAAAGGATGGAGCACATCATGCCCCTTCTGTCCCTGTTTCTCAAGCAGATGTGATGATGCCTGATTTTCCTCCAATAACAGAAATGGTGACAGGAAATATTCTTGATATTCCCGAAGAAAGTTATATGGCTCCTGAGACAGATGAGGGTTATTTGGATCCTTCTTCATTGGGGGTTGGTGGGTCATTTCCCGTTGATTTTGAAGGTATTTCACCTGATGCAGACATTGATGATTTGTTAGGCAATTCTATTTGGGATGATCTTTTGCAAACTCCAGTTCCGGATGATATCGAGACCAATGTGGCCGAAGTATCCATTGGGAATGAGGTCCAGCCAACGGAAAATGGATGGAACAAAACTCAACATATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCGAAAAGAGTTTGA 1476 0.4634 MEGGGSTPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDHWEFANEGFLRGQKHLLRTITRRKPAHGHNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQEGIAETEQAAAPDGQIVKYQPLMNEAAKAMLRQIMKWDTSHVESFNKNSDNYMIGDGLSSSSAMDSGSSSSWTSGVTLQEVSPAAVQSTHFPAAPGTQGHVPSTVKPEILSVPQAVASEKVTKDGAHHAPSVPVSQADVMMPDFPPITEMVTGNILDIPEESYMAPETDEGYLDPSSLGVGGSFPVDFEGISPDADIDDLLGNSIWDDLLQTPVPDDIETNVAEVSIGNEVQPTENGWNKTQHMDHLTEQMGLLSSDAKRV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1960 491 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g1960 491 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 11 477 - -
Ssu2g1960 491 Coils Coil 139 166 - -
Ssu2g1960 491 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g1960 491 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g1960 491 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g1960 491 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g1960 491 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g1960 491 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu2g1960 491 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Ssu2g1960 491 Gene3D - 14 111 IPR036388 -
Ssu2g1960 491 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 477 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1960 Ssu-Chr2 72213924 72217397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1960 8 485 HSF AT1G32330 55.785 3.21e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu2g1960 HSF_DNA-bind 2.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1960 K09419 - gmx:100815121 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1960 2 72213924 72217397 Ssu2g1960 2 72213924 72217397 ECH