Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1958 ATGCAGCAGCATATTTCACAACACAATAGCATCCCAGTAAGCTCCAGCATGAGAGGGAAACAGCAGCGTGCAGCGGAAGACTCGTCCTTCACTGCGAAGCCCTCTTCTCCTCACCACAACCAAAATTTGGGCCCGCCAACCCAACGCAGGACCGCACGGAGGAACCGAGGCCCACAACACCACCACCCGAACTTGAAATTCCGCGTCGTCAACAAGCCCGAACCGCTTCCTTCTTCCGACTCTCACTCCGTGGAGGATGTAAATCTTGACGTCACTGTCACGCCCCAAAATCGCGATAAGGAGAACATTGGTGCCTCAGAGCTCAACGCCGTTGACTACACCGATCGCATGGCTAGTTCAAGCAAGGCCGAGGAAGGAGACGACGACGACGATATTCAGGCTAGGCTTGATAAGTTGCTCGGTAAAATCGAGGAACCTGAATTGTCCGAGGAACAGATCAGAATCAATGATCAATTGCAGCAAGATGAGATACTTGTGGTGGAATCCATTTATGGAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGACATGCGTTTTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATTGCCATCACTGCTAAGCTCAACTCTCTTAATCAACTTGAGTCTGTAAGAAACAATCCAGATGAGTTCTTATACACTTTCAAAGTCCAATATCTTCCACCAATTGTTTTGACGTGTTTATTACCTAAGTCATACCCGAGCCACCAACCACCTATTTTTACAATCTCTGTTAAGTGGTTGGAACCTCGGAAGATTCTGAGTCTCTGCTCCAAGTTGGATTCAGTATGGGCAGAACAACAGGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTCGGATTTGATGAGGAAATCATAATTGGGCCTTATGGCATGAATTGTGTCCAGGATAAGCGTGTTGTTTCAGGAGCTGAAAGCATTGATGTTGATATTCTGTTTTTACGAAGTTACAATGATCAAAGACACAATGAGAACTTCCTCAAAGAATTGCATGAATGTAACATTTGCTTTAGTGAATATGCAGGTACTGAGTTTATCCGATTACCATGTAAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTGCGGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAGAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAAtgttattttagcttttgtacCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTTGTCTCAATTAAAGGCAGATCAAAAGCGTAGGGAACGTGAGAAGATCAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGCGGTAATTGTGAACAATACTTCTGTTATCGCTGCAACAAAGCAATTGATGCATCAGATCCATATGGACATTTCAGgGATGGTTCATGTGAATTGTTCCCACAAGAAATGGTTGAGTCCTGGCACGAGCGCATAAATCATCGCCAGGTGGTAGGACAAGTACAGGCCGAGCTCTTTCCTCAACGTGGCTTGGCATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTATGCAAAGAGATTGTCAGGCGCAGCACTAAGCATTATGGACCAAAGGGCTGCAAACAGCACAGCGAGGGATAG 1980 0.4354 MQQHISQHNSIPVSSSMRGKQQRAAEDSSFTAKPSSPHHNQNLGPPTQRRTARRNRGPQHHHPNLKFRVVNKPEPLPSSDSHSVEDVNLDVTVTPQNRDKENIGASELNAVDYTDRMASSSKAEEGDDDDDIQARLDKLLGKIEEPELSEEQIRINDQLQQDEILVVESIYGENVFSLERWKDMRFFQIHIHIDVLGEIAITAKLNSLNQLESVRNNPDEFLYTFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLEPRKILSLCSKLDSVWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEIIIGPYGMNCVQDKRVVSGAESIDVDILFLRSYNDQRHNENFLKELHECNICFSEYAGTEFIRLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCAVMIPPGLLKHLLDDTDYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMTLDMKLQILQDRQNLSQLKADQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPQEMVESWHERINHRQVVGQVQAELFPQRGLACPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRSTKHYGPKGCKQHSEG 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1958 659 MobiDBLite consensus disorder prediction 1 104 - -
Ssu2g1958 659 SMART ring_2 352 399 IPR001841 -
Ssu2g1958 659 SMART ring_2 440 528 IPR001841 -
Ssu2g1958 659 SMART ring_2 608 637 IPR001841 -
Ssu2g1958 659 Pfam IBR domain, a half RING-finger domain 515 558 IPR002867 -
Ssu2g1958 659 Pfam IBR domain, a half RING-finger domain 420 478 IPR002867 -
Ssu2g1958 659 Pfam RWD domain 158 291 IPR006575 GO:0005515
Ssu2g1958 659 SUPERFAMILY RING/U-box 605 657 - -
Ssu2g1958 659 ProSitePatterns Zinc finger RING-type signature. 369 378 IPR017907 -
Ssu2g1958 659 SMART RWD2001b 162 297 IPR006575 GO:0005515
Ssu2g1958 659 SMART ibrneu5 507 572 IPR002867 -
Ssu2g1958 659 SMART ibrneu5 420 478 IPR002867 -
Ssu2g1958 659 ProSiteProfiles RWD domain profile. 162 297 IPR006575 GO:0005515
Ssu2g1958 659 ProSiteProfiles TRIAD supradomain profile. 348 577 IPR044066 -
Ssu2g1958 659 Gene3D Ubiquitin Conjugating Enzyme 149 298 IPR016135 -
Ssu2g1958 659 Gene3D - 492 600 - -
Ssu2g1958 659 Pfam zinc-RING finger domain 351 397 IPR001841 -
Ssu2g1958 659 SUPERFAMILY RING/U-box 511 567 - -
Ssu2g1958 659 SUPERFAMILY UBC-like 156 291 IPR016135 -
Ssu2g1958 659 MobiDBLite consensus disorder prediction 76 103 - -
Ssu2g1958 659 ProSiteProfiles Zinc finger RING-type profile. 352 400 IPR001841 -
Ssu2g1958 659 SUPERFAMILY RING/U-box 347 432 - -
Ssu2g1958 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 435 IPR013083 -
Ssu2g1958 659 MobiDBLite consensus disorder prediction 1 49 - -
Ssu2g1958 659 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 131 641 IPR031127 GO:0004842|GO:0016567
Ssu2g1958 659 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 131 641 - -
Ssu2g1958 659 SUPERFAMILY RING/U-box 420 483 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1958 351 582 C3H Transcription Factor Family AT2G31770 25.417 2.34e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1958 K11971 - gmx:100500662 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1958 2 72190751 72196838 Ssu2g1958 2 72190751 72196838 ECH