Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g1958 | ATGCAGCAGCATATTTCACAACACAATAGCATCCCAGTAAGCTCCAGCATGAGAGGGAAACAGCAGCGTGCAGCGGAAGACTCGTCCTTCACTGCGAAGCCCTCTTCTCCTCACCACAACCAAAATTTGGGCCCGCCAACCCAACGCAGGACCGCACGGAGGAACCGAGGCCCACAACACCACCACCCGAACTTGAAATTCCGCGTCGTCAACAAGCCCGAACCGCTTCCTTCTTCCGACTCTCACTCCGTGGAGGATGTAAATCTTGACGTCACTGTCACGCCCCAAAATCGCGATAAGGAGAACATTGGTGCCTCAGAGCTCAACGCCGTTGACTACACCGATCGCATGGCTAGTTCAAGCAAGGCCGAGGAAGGAGACGACGACGACGATATTCAGGCTAGGCTTGATAAGTTGCTCGGTAAAATCGAGGAACCTGAATTGTCCGAGGAACAGATCAGAATCAATGATCAATTGCAGCAAGATGAGATACTTGTGGTGGAATCCATTTATGGAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGACATGCGTTTTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATTGCCATCACTGCTAAGCTCAACTCTCTTAATCAACTTGAGTCTGTAAGAAACAATCCAGATGAGTTCTTATACACTTTCAAAGTCCAATATCTTCCACCAATTGTTTTGACGTGTTTATTACCTAAGTCATACCCGAGCCACCAACCACCTATTTTTACAATCTCTGTTAAGTGGTTGGAACCTCGGAAGATTCTGAGTCTCTGCTCCAAGTTGGATTCAGTATGGGCAGAACAACAGGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTACATGGTTCTTCTCTTTCTCATCTCGGATTTGATGAGGAAATCATAATTGGGCCTTATGGCATGAATTGTGTCCAGGATAAGCGTGTTGTTTCAGGAGCTGAAAGCATTGATGTTGATATTCTGTTTTTACGAAGTTACAATGATCAAAGACACAATGAGAACTTCCTCAAAGAATTGCATGAATGTAACATTTGCTTTAGTGAATATGCAGGTACTGAGTTTATCCGATTACCATGTAAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTGCGGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAGAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACACCTTGTATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAAtgttattttagcttttgtacCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTTGTCTCAATTAAAGGCAGATCAAAAGCGTAGGGAACGTGAGAAGATCAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGCGGTAATTGTGAACAATACTTCTGTTATCGCTGCAACAAAGCAATTGATGCATCAGATCCATATGGACATTTCAGgGATGGTTCATGTGAATTGTTCCCACAAGAAATGGTTGAGTCCTGGCACGAGCGCATAAATCATCGCCAGGTGGTAGGACAAGTACAGGCCGAGCTCTTTCCTCAACGTGGCTTGGCATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTATGCAAAGAGATTGTCAGGCGCAGCACTAAGCATTATGGACCAAAGGGCTGCAAACAGCACAGCGAGGGATAG | 1980 | 0.4354 | MQQHISQHNSIPVSSSMRGKQQRAAEDSSFTAKPSSPHHNQNLGPPTQRRTARRNRGPQHHHPNLKFRVVNKPEPLPSSDSHSVEDVNLDVTVTPQNRDKENIGASELNAVDYTDRMASSSKAEEGDDDDDIQARLDKLLGKIEEPELSEEQIRINDQLQQDEILVVESIYGENVFSLERWKDMRFFQIHIHIDVLGEIAITAKLNSLNQLESVRNNPDEFLYTFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLEPRKILSLCSKLDSVWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEIIIGPYGMNCVQDKRVVSGAESIDVDILFLRSYNDQRHNENFLKELHECNICFSEYAGTEFIRLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCAVMIPPGLLKHLLDDTDYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMTLDMKLQILQDRQNLSQLKADQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPQEMVESWHERINHRQVVGQVQAELFPQRGLACPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRSTKHYGPKGCKQHSEG | 659 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g1958 | 659 | MobiDBLite | consensus disorder prediction | 1 | 104 | - | - | |
Ssu2g1958 | 659 | SMART | ring_2 | 352 | 399 | IPR001841 | - | |
Ssu2g1958 | 659 | SMART | ring_2 | 440 | 528 | IPR001841 | - | |
Ssu2g1958 | 659 | SMART | ring_2 | 608 | 637 | IPR001841 | - | |
Ssu2g1958 | 659 | Pfam | IBR domain, a half RING-finger domain | 515 | 558 | IPR002867 | - | |
Ssu2g1958 | 659 | Pfam | IBR domain, a half RING-finger domain | 420 | 478 | IPR002867 | - | |
Ssu2g1958 | 659 | Pfam | RWD domain | 158 | 291 | IPR006575 | GO:0005515 | |
Ssu2g1958 | 659 | SUPERFAMILY | RING/U-box | 605 | 657 | - | - | |
Ssu2g1958 | 659 | ProSitePatterns | Zinc finger RING-type signature. | 369 | 378 | IPR017907 | - | |
Ssu2g1958 | 659 | SMART | RWD2001b | 162 | 297 | IPR006575 | GO:0005515 | |
Ssu2g1958 | 659 | SMART | ibrneu5 | 507 | 572 | IPR002867 | - | |
Ssu2g1958 | 659 | SMART | ibrneu5 | 420 | 478 | IPR002867 | - | |
Ssu2g1958 | 659 | ProSiteProfiles | RWD domain profile. | 162 | 297 | IPR006575 | GO:0005515 | |
Ssu2g1958 | 659 | ProSiteProfiles | TRIAD supradomain profile. | 348 | 577 | IPR044066 | - | |
Ssu2g1958 | 659 | Gene3D | Ubiquitin Conjugating Enzyme | 149 | 298 | IPR016135 | - | |
Ssu2g1958 | 659 | Gene3D | - | 492 | 600 | - | - | |
Ssu2g1958 | 659 | Pfam | zinc-RING finger domain | 351 | 397 | IPR001841 | - | |
Ssu2g1958 | 659 | SUPERFAMILY | RING/U-box | 511 | 567 | - | - | |
Ssu2g1958 | 659 | SUPERFAMILY | UBC-like | 156 | 291 | IPR016135 | - | |
Ssu2g1958 | 659 | MobiDBLite | consensus disorder prediction | 76 | 103 | - | - | |
Ssu2g1958 | 659 | ProSiteProfiles | Zinc finger RING-type profile. | 352 | 400 | IPR001841 | - | |
Ssu2g1958 | 659 | SUPERFAMILY | RING/U-box | 347 | 432 | - | - | |
Ssu2g1958 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 435 | IPR013083 | - | |
Ssu2g1958 | 659 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Ssu2g1958 | 659 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 131 | 641 | IPR031127 | GO:0004842|GO:0016567 | |
Ssu2g1958 | 659 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 131 | 641 | - | - | |
Ssu2g1958 | 659 | SUPERFAMILY | RING/U-box | 420 | 483 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g1958 | 351 | 582 | C3H Transcription Factor Family | AT2G31770 | 25.417 | 2.34e-15 | 77.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g1958 | K11971 | - | gmx:100500662 | 1089.33 |