Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1956 ATGTCAGACCGGGGTACCTTCTCCGGCCACTCGGCCGTGGATGCTAAGAGCAAAAAGGAACACAAAGTTCCTTTGTTGAAACTCTTCTCTTTTGCTGACTTCTATGACTATGTATTAATGGCCGTTGGATCTGTTGGGGCATGCATACATGGTGCTTCTGTTCCCgttttctttatcttctttgGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGAATGgcttatttaaaatcaatgctGAATCAAGATATAAGCCTATTTGATACCGAGGCATCAACAGGAGAGGTCATTTCTGCCATTACTAGTGACATTATTATTGTTCAGGATGCACTATCCGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCGGGCTTTGTTATTGGCTTTGTTAGAGTGTGGCAGATCAGTCTAGTGACACTTTCAATTGTCCCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGGCTTATTGCAAAAGTTCGAAAAGCCTACGTGAGGGCTGGTGAAATCGCTCAAGAGGTGATAGGTAATGTTAGAACGGTCCAAGCATTTGCGGGAGAAGAAAGAGCAGTAAGATCATATAAAGCGGCACTCATGAAAACTTACGTAAACGGTAGAAAAGCAGGTTTGGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGCATTGTTGTTCACAAGAATATTGCCAATGGAGGCGAGTCTTTCACTACCATGCTCAACGTTGTGATCGCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCTCTTCATTCATACGAGCAAAGGCAGCAGCTTATCCAATATTTGAGATGATAGAGAGGGACACAGTGAGCAAAAGTAGCTCAAAAACTGGTCGCAAGTTAGGCAAATTGGAGGGTCATATCCAGTTTAAGAATGTCTGTTTCAGTTACCCATCTCGTCCAGATGTAGTAATATTCAATAACCTGTGTCTAGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTAATATCATTGATTGAACGCTTTTATGAACCACTTTCTGGTCAGATACTATTAGACAGGAATGATATCAGGGAACTTGATCTCAGATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTGCTACGAGCATCAAAGAGAACATACTTTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGACAGATTAGAAACTCAggttgGTGAGAGGGGGATACAACTCTCAGGAGGACAAAAGCAAAGGATTGCAATATCTCGTGCCATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTACAGGAGGCTCTTGATCGTGTCATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCTACCATTAGGAATGCAGATGTGATTGCTGTTGTACAGGGAGGGAAGATTGTGGAAACTGGTAACCATGAGGAGCTTATGTCCAACCCAACTGGTGTATATGCATCTCTTGTTCAACTACAGGAGGCAGCTTCTCTGCAGCGCCTCCCATCAGTTGGTCCTAGCATGGGACGGCAACCAAGCATAACCTACTCAAGAGAGTTATCCCGTACAACAACAAGCCTCGGTGGTAGTTTTCGATCAGATAAAGAATCTATAGGCCGGGTTTGTGCTGATGAAACAGAAAATGTAAGCAAGACAAGGCACGTTGCAGCAGCAAGACTGTATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTATTGGGACCTTATGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCACGCACTTGTATCATACTACATGGACTGGGACACAACATGTCGCGAAATCAAAAAAATTGCTTTCCTCTTTTGTGGAGCAGCAGTTATAACTATCACCGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTTACCCTTCGTGTGAGAGAAATGATGTTTTCTGCTATCTTGAAGAACGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCAGTTAGAGACTGATGCAACATTATTACGAACTATAGTTGTTGATCGTTCAACAATTTTGTTACAGAATATTGCTTTGGTTATTGCTTCATTTATTATAGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGAGAGGCTGTGAGCAATATACGCACTGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTCTATGCTAATGAGCTTGTGGATCCATCCAAACGCTCATTTCAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCATATGGCCTTGCCTTGTGGTAG 2778 0.4251 MSDRGTFSGHSAVDAKSKKEHKVPLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFVIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAQEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISSFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEGHIQFKNVCFSYPSRPDVVIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNDIRELDLRWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPTGVYASLVQLQEAASLQRLPSVGPSMGRQPSITYSRELSRTTTSLGGSFRSDKESIGRVCADETENVSKTRHVAAARLYSMVGPDWFYGVIGTLCAFIAGAQMPLFALGISHALVSYYMDWDTTCREIKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIALVIASFIIAFILNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGIFYGISQFFIFSSYGLALW 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1956 925 SUPERFAMILY ABC transporter transmembrane region 668 925 IPR036640 GO:0005524|GO:0016021
Ssu2g1956 925 Gene3D - 354 603 IPR027417 -
Ssu2g1956 925 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g1956 925 SUPERFAMILY ABC transporter transmembrane region 27 334 IPR036640 GO:0005524|GO:0016021
Ssu2g1956 925 Gene3D ABC transporter type 1, transmembrane domain 640 925 IPR036640 GO:0005524|GO:0016021
Ssu2g1956 925 SMART AAA_5 391 577 IPR003593 -
Ssu2g1956 925 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 925 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g1956 925 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 16 925 - -
Ssu2g1956 925 Gene3D ABC transporter type 1, transmembrane domain 27 606 IPR036640 GO:0005524|GO:0016021
Ssu2g1956 925 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 925 IPR039421 -
Ssu2g1956 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Ssu2g1956 925 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Ssu2g1956 925 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Ssu2g1956 925 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 925 - -
Ssu2g1956 925 Pfam ABC transporter transmembrane region 682 925 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g1956 925 Pfam ABC transporter transmembrane region 45 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g1956 925 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Ssu2g1956 925 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Ssu2g1956 925 Pfam ABC transporter 383 531 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1956 Ssu-Chr2 72137494 72144304 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1956 14 925 Calmodulin-binding Proteins AT2G36910 47.696 0.0 842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1956 2 72137494 72144304 Ssu2g1956 2 72137494 72144304 ECH