Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1955 ATGTCTCACCAAATGGCGGTTACCTTTGTGCTGAGAGTGTACACCTTTTGCAGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTGATAGTAACAGCACTGGCTATGGGGGAGACTTTGGCCCTGGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAACGGGTGATGTTGGAGAAGAGTTGAAGACGGTGGAGGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCagatgtaattattttcaaggaTTTCAATCTAAGAGTTCCTGCAGGCAAGAGTGTTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAGTGATCTCCCTTATACTCAGATTTTATGATCCAACATCCGGGAGGGTGTTAATTGATGGTAAGATATTTGAACTATCAACACTTTATTCGTCCAATCCACTACttgtgcaaaagaaaaaagagtatcATAGCATTAGAGAAGTTTTCCAAAGTAAAATGACTAAGGCATGCATAACAATCATTCTAGAGAAGGCTTATTGA 609 0.3826 MSHQMAVTFVLRVYTFCRYGSVLMGKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDVGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKIFELSTLYSSNPLLVQKKKEYHSIREVFQSKMTKACITIILEKAY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1955 202 Gene3D ABC transporter type 1, transmembrane domain 5 82 IPR036640 GO:0005524|GO:0016021
Ssu2g1955 202 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 158 IPR039421 -
Ssu2g1955 202 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 158 - -
Ssu2g1955 202 Gene3D - 83 157 IPR027417 -
Ssu2g1955 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 157 IPR027417 -
Ssu2g1955 202 Pfam ABC transporter 112 161 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1955 Ssu-Chr2 72136840 72137448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1955 19 164 Calmodulin-binding Proteins AT2G36910 44.595 3.50e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1955 K05658 - gmx:100810688 254.218