Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1954 ATGCTTAAGCAATGTGCATGTAACATTCTTCTAACAATGATAAATCAAATTCTTACAGGAAAAGACATCACGAGACTTAACCTGAAATCACTTAGGAAACACATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCTACatcaatttatgaaaatatactTTATGGAAAGGAAGGTGCCTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAACGCTCATAGCTTTATCAGTGCTCTTCCCGAGGGTTACTCCACCAAAGTAGGTGAACGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATTGCAAGAGCTGTTTTAAAGAACCCTGAAATCTTGCTACTGGATGAAGCCACAAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCATTAGACAGATTAATGCAGAATAGAACAACAGTTATAGTGGCACATAGGCTATCCACTATAAGAAATGCAGACCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAGCAAGGGACTCATCCAAGTCTTATAGAGAATAAAAATGGAGCATACTTTAAATTAGTCAACCTTCAACAACAACAGCATCAATTATAG 606 0.3894 MLKQCACNILLTMINQILTGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEQGTHPSLIENKNGAYFKLVNLQQQQHQL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1954 201 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 18 198 - -
Ssu2g1954 201 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 198 IPR039421 -
Ssu2g1954 201 ProSitePatterns ABC transporters family signature. 96 110 IPR017871 GO:0005524
Ssu2g1954 201 Gene3D - 18 196 IPR027417 -
Ssu2g1954 201 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 193 IPR003439 GO:0005524
Ssu2g1954 201 Pfam ABC transporter 17 124 IPR003439 GO:0005524
Ssu2g1954 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1954 Ssu-Chr2 72136224 72136829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1954 17 200 Calmodulin-binding Proteins AT2G36910 62.703 1.53e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1954 K05658 - lja:Lj0g3v0304759.1 343.199