Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g1948 | ATGGGCAAGAAGAAACCCAAGGGCCCGCAACAAACCCCCCAAACCGACACCGTTTCATCCCCTTCCAGCATTTTCACCAAGCTCTTCAGCAACGCGCCGGAGCAGAGCACCGCCACCGCCGCCTCTCTATTTTCCGAGGACAACCCCTTCCGAAGAAAACCCGCTCCGCTTTCCGACTCAACGAACAGCACTCGGAGCCCTAACAGCGGCGGCCCCGTGAACCTTGATTCCGGCGACGAGAAGAAGCGGAAGAGGAACAAGGAGAAGACCTCAAACCCAGCCCTCGATTCCGATTCCGTAACCGAAGCTtcggagaagaagaggaaacgCGGTTCCGacgaaggaagagaaagagaccCTAATTTGGGCGCAGAAGCAAATgggaagaggaaaaggaaaagggacGAAGTTGAGAAGGAGTGGGAGGAGAAGAAGCATGGGGCGGTGGAGGAAGGTGGAAAGGAAGGGATTGAGAATAAAACTGTTGGGAGCAAGAGGAAGACGTTGGATGATCCAGCTGATATGATGGTTTCGAAGGAGGGTTTTGATGACGAGGATAAGCTTTTGAGGACTGTTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTCTGTTGAAGGAGTTTAAGAAGTTTGGCGAGGTTGAGTCTGTGAGGATTCGTTCTGTCCCAATACAAGATACCAAGAAACCTAGGAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCACGCATACATTGTTTTCAAAACTGACCAATCGGCTCAGGCTTCTTTGTCACACAACATGACACTGGTTGAAGGAAATCACATTCGTGTTGATGGGGCATGCCCACCCCGCAAGAAGCTTAAAGGGGAGAGTGTTCCACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCGTTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAGCGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCAAACCCATCATCAGCACAAGCTACTAGTACCCCTGCAAAGAAGTTGTCTGTGGCTTCAAGGTCTCCTCCTTCTAGCAGTAATAACAGGTCAAACAGAAAAACCACTGCATCTTATCAGGGTCTACGTGCAACCAAATCTGGTGTGCCCAAGAAAATCCATGGAGGAGAAAAACCAAAAGAACGCAAGACAAAAAGACCTACAGTAGCTGCCAGAAAGGCTAAAGCAAAATTGCTTAAGGAGAGTGGTCTACCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCCTACGTAAtaaaaaagccaaaaagaaCAGGTAG | 1506 | 0.4482 | MGKKKPKGPQQTPQTDTVSSPSSIFTKLFSNAPEQSTATAASLFSEDNPFRRKPAPLSDSTNSTRSPNSGGPVNLDSGDEKKRKRNKEKTSNPALDSDSVTEASEKKRKRGSDEGRERDPNLGAEANGKRKRKRDEVEKEWEEKKHGAVEEGGKEGIENKTVGSKRKTLDDPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTDQSAQASLSHNMTLVEGNHIRVDGACPPRKKLKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLCHAKADATPSKRPNPSSAQATSTPAKKLSVASRSPPSSSNNRSNRKTTASYQGLRATKSGVPKKIHGGEKPKERKTKRPTVAARKAKAKLLKESGLPKQAGVKRKLDSRTPDSTLRNKKAKKNR | 501 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 76 | 92 | - | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 1 | 168 | - | - | |
Ssu2g1948 | 501 | Gene3D | - | 295 | 405 | IPR012677 | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 55 | 73 | - | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 439 | 453 | - | - | |
Ssu2g1948 | 501 | SUPERFAMILY | RNA-binding domain, RBD | 297 | 391 | IPR035979 | GO:0003676 | |
Ssu2g1948 | 501 | Gene3D | - | 186 | 282 | IPR012677 | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 100 | 168 | - | - | |
Ssu2g1948 | 501 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 190 | 284 | IPR000504 | GO:0003723 | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 380 | 501 | - | - | |
Ssu2g1948 | 501 | PANTHER | RNA-BINDING PROTEIN 34 | 45 | 499 | - | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 8 | 44 | - | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 463 | 495 | - | - | |
Ssu2g1948 | 501 | CDD | RRM2_RBM34 | 302 | 377 | IPR034221 | - | |
Ssu2g1948 | 501 | SMART | rrm1_1 | 191 | 280 | IPR000504 | GO:0003723 | |
Ssu2g1948 | 501 | SMART | rrm1_1 | 302 | 378 | IPR000504 | GO:0003723 | |
Ssu2g1948 | 501 | SUPERFAMILY | RNA-binding domain, RBD | 182 | 290 | IPR035979 | GO:0003676 | |
Ssu2g1948 | 501 | CDD | RRM1_RBM34 | 190 | 280 | IPR034220 | - | |
Ssu2g1948 | 501 | MobiDBLite | consensus disorder prediction | 387 | 432 | - | - | |
Ssu2g1948 | 501 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 301 | 382 | IPR000504 | GO:0003723 | |
Ssu2g1948 | 501 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 45 | 499 | - | - | |
Ssu2g1948 | 501 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 192 | 234 | IPR000504 | GO:0003723 | |
Ssu2g1948 | 501 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 303 | 375 | IPR000504 | GO:0003723 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g1948 | 192 | 367 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.698 | 1.88e-06 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g1948 | K14837 | - | gmx:100784494 | 750.74 |