Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1948 ATGGGCAAGAAGAAACCCAAGGGCCCGCAACAAACCCCCCAAACCGACACCGTTTCATCCCCTTCCAGCATTTTCACCAAGCTCTTCAGCAACGCGCCGGAGCAGAGCACCGCCACCGCCGCCTCTCTATTTTCCGAGGACAACCCCTTCCGAAGAAAACCCGCTCCGCTTTCCGACTCAACGAACAGCACTCGGAGCCCTAACAGCGGCGGCCCCGTGAACCTTGATTCCGGCGACGAGAAGAAGCGGAAGAGGAACAAGGAGAAGACCTCAAACCCAGCCCTCGATTCCGATTCCGTAACCGAAGCTtcggagaagaagaggaaacgCGGTTCCGacgaaggaagagaaagagaccCTAATTTGGGCGCAGAAGCAAATgggaagaggaaaaggaaaagggacGAAGTTGAGAAGGAGTGGGAGGAGAAGAAGCATGGGGCGGTGGAGGAAGGTGGAAAGGAAGGGATTGAGAATAAAACTGTTGGGAGCAAGAGGAAGACGTTGGATGATCCAGCTGATATGATGGTTTCGAAGGAGGGTTTTGATGACGAGGATAAGCTTTTGAGGACTGTTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTCTGTTGAAGGAGTTTAAGAAGTTTGGCGAGGTTGAGTCTGTGAGGATTCGTTCTGTCCCAATACAAGATACCAAGAAACCTAGGAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCACGCATACATTGTTTTCAAAACTGACCAATCGGCTCAGGCTTCTTTGTCACACAACATGACACTGGTTGAAGGAAATCACATTCGTGTTGATGGGGCATGCCCACCCCGCAAGAAGCTTAAAGGGGAGAGTGTTCCACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCGTTTGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTATAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAGCGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCAAACCCATCATCAGCACAAGCTACTAGTACCCCTGCAAAGAAGTTGTCTGTGGCTTCAAGGTCTCCTCCTTCTAGCAGTAATAACAGGTCAAACAGAAAAACCACTGCATCTTATCAGGGTCTACGTGCAACCAAATCTGGTGTGCCCAAGAAAATCCATGGAGGAGAAAAACCAAAAGAACGCAAGACAAAAAGACCTACAGTAGCTGCCAGAAAGGCTAAAGCAAAATTGCTTAAGGAGAGTGGTCTACCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAGTCGTACTCCAGACAGCACCCTACGTAAtaaaaaagccaaaaagaaCAGGTAG 1506 0.4482 MGKKKPKGPQQTPQTDTVSSPSSIFTKLFSNAPEQSTATAASLFSEDNPFRRKPAPLSDSTNSTRSPNSGGPVNLDSGDEKKRKRNKEKTSNPALDSDSVTEASEKKRKRGSDEGRERDPNLGAEANGKRKRKRDEVEKEWEEKKHGAVEEGGKEGIENKTVGSKRKTLDDPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTDQSAQASLSHNMTLVEGNHIRVDGACPPRKKLKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLCHAKADATPSKRPNPSSAQATSTPAKKLSVASRSPPSSSNNRSNRKTTASYQGLRATKSGVPKKIHGGEKPKERKTKRPTVAARKAKAKLLKESGLPKQAGVKRKLDSRTPDSTLRNKKAKKNR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1948 501 MobiDBLite consensus disorder prediction 76 92 - -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 1 168 - -
Ssu2g1948 501 Gene3D - 295 405 IPR012677 -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 55 73 - -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 439 453 - -
Ssu2g1948 501 SUPERFAMILY RNA-binding domain, RBD 297 391 IPR035979 GO:0003676
Ssu2g1948 501 Gene3D - 186 282 IPR012677 -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 100 168 - -
Ssu2g1948 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 284 IPR000504 GO:0003723
Ssu2g1948 501 MobiDBLite consensus disorder prediction 380 501 - -
Ssu2g1948 501 PANTHER RNA-BINDING PROTEIN 34 45 499 - -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 8 44 - -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 463 495 - -
Ssu2g1948 501 CDD RRM2_RBM34 302 377 IPR034221 -
Ssu2g1948 501 SMART rrm1_1 191 280 IPR000504 GO:0003723
Ssu2g1948 501 SMART rrm1_1 302 378 IPR000504 GO:0003723
Ssu2g1948 501 SUPERFAMILY RNA-binding domain, RBD 182 290 IPR035979 GO:0003676
Ssu2g1948 501 CDD RRM1_RBM34 190 280 IPR034220 -
Ssu2g1948 501 MobiDBLite consensus disorder prediction 387 432 - -
Ssu2g1948 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 382 IPR000504 GO:0003723
Ssu2g1948 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 499 - -
Ssu2g1948 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 234 IPR000504 GO:0003723
Ssu2g1948 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 375 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1948 192 367 Eukaryotic Initiation Factors Gene Family AT1G71770 25.698 1.88e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1948 K14837 - gmx:100784494 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1948 2 72046569 72051272 Ssu2g1948 2 72046569 72051272 ECH