Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1946 ATGCTAGCCGcccttcttctatttataaaccCATCTCAATCCTTCTCCCTCTTGTCTTCTTATTTTCCTTTGCCCAACTCAACAAATcacaacacacacaaaaataccCTTCACCCAATTACACCcccttttaagattttctcaTTTCTCGTATCTGCAACCAGGCAAGATGGCCCCTTCATTCGACACAAGTGCTCAGACAGTATGCGTCATGGACGCTTCGGGCCAGTTGGGCTTCAGCCTGGTCCAGAGACTCCTCCAAAGGGGCTACACCGTTCACGCCTCCGTTCAAAAATATGGTATTTACCAATTAGTCAATCAATTACCTTCTATTTTGCCGCTTTGACTATGCTTCCTTTCCTTGAAATTGCTTTGCTTTCGGATTGTTTCCCAGGGGAAGAAAACCAATTCAATGGGATTTCTACCGATCCCAATAAGCTCAAGGTTTTTCGATCCGACCCATTTGATTACCATAGCATAATCGATGCACTCAGAGGCTGCTCTGGTTTGTTCTACACATTCGAACCTCCCCTTGACCAACCAAATTATGATGAATACATGGCAGACGTGGAAGTAAGAGCTGCACACAACGTGCTCGAAGCATGTGCTCAGACGGAAACAATAGATAAAGTGGTTTTCACATCCTCAGCAACCGCAGTGGTTTGGAGGGAGGATCGCAAGACCATGGAACTGGATCTAGATGAGAGACATTGGAGTGATGTCAATTTCTGTCGCAAATTTAAGTTATGGCATGGGGTGTCAAAGACAATGGCAGAGAAGACAGCATGGGCATTGACAATGGACAGAGGAGTGAATATGGTGTCAATTAACGCAGGCTTGTTGATGGCTCATGATCTGTCCATCAAACATCCATACATGAGAGGAGCAGCTGAGATGTACGAGGACGGGGTTTTCGTGACCGTTGATTTGGGGTTCATGGTGGATGCCCACATCTGCGTCTACGAGGATGTCTCATCCTACGGTCGTTATTTGTGCTTCAATCACATCATCAACACCCACGACGACGCCGTTCAGCTCGCCCGCAGGTTGACGCCTGCTGCCTCTTCTTCCTTGCCACAAAGTGGTGACATCTATGGTAAGAGTTTTATCGAACAGAGAATAAGCAACAAGAAGTTGAACAAATTAATGGTGGACTTCGAGGCTTGA 1167 0.4422 MLAALLLFINPSQSFSLLSSYFPLPNSTNHNTHKNTLHPITPPFKIFSFLVSATRQDGPFIRHKCSDSMRHGRFGPVGLQPGPETPPKGLHRSRLRSKIWYLPISQSITFYFAALTMLPFLEIALLSDCFPGEENQFNGISTDPNKLKVFRSDPFDYHSIIDALRGCSGLFYTFEPPLDQPNYDEYMADVEVRAAHNVLEACAQTETIDKVVFTSSATAVVWREDRKTMELDLDERHWSDVNFCRKFKLWHGVSKTMAEKTAWALTMDRGVNMVSINAGLLMAHDLSIKHPYMRGAAEMYEDGVFVTVDLGFMVDAHICVYEDVSSYGRYLCFNHIINTHDDAVQLARRLTPAASSSLPQSGDIYGKSFIEQRISNKKLNKLMVDFEA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1946 388 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 133 387 - -
Ssu2g1946 388 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 133 387 - -
Ssu2g1946 388 Gene3D - 131 388 - -
Ssu2g1946 388 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 148 260 IPR002225 GO:0003854|GO:0006694|GO:0016616
Ssu2g1946 388 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 144 355 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1946 Ssu-Chr2 71980397 71983804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1946 133 386 Monolignol Biosynthesis Gene Families AT5G58490 27.985 5.67e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1946 - - gmx:100790333 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1946 2 71980397 71983804 Ssu2g1946 2 71980397 71983804 ECH