Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1945 ATGCGTAAGAATCCCATCTTCAAAAAAccgaagaaaaagaagagaaactgCAAAGAAAAAATCACACCAATATTCCGTGCTCCATTTGCCCCCACACCGCGCTTTAAGCTTCTCTCATCCATGCAAACAACCAGCAATGTCTTCGCCAAAATTAAAGCGGACAATTCCGAAACCCTACCACCGCCGCCACAAGTCACCCCATCAACGCTAATAGTCTTCGCCATCGCCATGGTGGTGTTCTGCTTTGTGGGTTTCAGCGTCGTCTTCTTCTGCAGGTGTTGTTTCGTGAACGTCTCAAGCGCGAGCACCCACGTTCGTCTTTCTCCCAGTGCTTCTCCCTACAGAGGCCTCGACCCTTCTCTGCTGCAAGCCTTCCCCACCTTCCTCTACGCCGCCGTAAAGGATCTCCGCAGGGAGAAGAAGTACTCCCTCGAATGCGCCATTTGCTTGTTGGAGTTCGATCACGATAGCGTGCTGCGACTCTTGACCGTTTGCTGCCACGTCTTCCATCGAGAATGCATCGACCCGTGGCTCCGTTCCCACAAGACCTGCCCGGTTTGTCGCACCGATCTTGAGTCGCCGGCCAACGAAATGCAAAAGCCCTCAGGAGTTTCAAACGAGGAGAATCTTCGCGTACGAGAAGAGAACAGGGATCACGTGTGCATTGATGTAAAAGACGGCGACGGGGACCAGAAacatgatgataatgatgatgagggAGTTTCAATGAGTGTGAGCATGCAGGAACAGAAGTTTGCACGGTCGCACTCAACGGGGCATTCTATAGTTATGATTAGAGGGGGTGAAGGAAGAGATGATTATGATGATGTAGCGTTGAAATTTGACGGGGGAGGGCATAGTTATTCCAAGAGTTGTTCTGGTTACAAAGATATGGCAAGGCCTGCTGCGCCTTGCAGTAACTGTGGTTATGTTCAAACTCTATTTGACAACTCTTCCCTTAatggtataaaaaatatttaa 981 0.4709 MRKNPIFKKPKKKKRNCKEKITPIFRAPFAPTPRFKLLSSMQTTSNVFAKIKADNSETLPPPPQVTPSTLIVFAIAMVVFCFVGFSVVFFCRCCFVNVSSASTHVRLSPSASPYRGLDPSLLQAFPTFLYAAVKDLRREKKYSLECAICLLEFDHDSVLRLLTVCCHVFHRECIDPWLRSHKTCPVCRTDLESPANEMQKPSGVSNEENLRVREENRDHVCIDVKDGDGDQKHDDNDDEGVSMSVSMQEQKFARSHSTGHSIVMIRGGEGRDDYDDVALKFDGGGHSYSKSCSGYKDMARPAAPCSNCGYVQTLFDNSSLNGIKNI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1945 326 PANTHER RING-H2 FINGER PROTEIN ATL29 57 274 - -
Ssu2g1945 326 SUPERFAMILY RING/U-box 139 194 - -
Ssu2g1945 326 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Ssu2g1945 326 Pfam Ring finger domain 145 188 IPR001841 -
Ssu2g1945 326 SMART ring_2 146 187 IPR001841 -
Ssu2g1945 326 PANTHER RING FINGER DOMAIN-CONTAINING 57 274 - -
Ssu2g1945 326 CDD RING-H2_PA-TM-RING 145 188 - -
Ssu2g1945 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1945 Ssu-Chr2 71962330 71963310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1945 64 263 Rapid Response to Elicitors AT3G05200 37.864 1.72e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1945 - - ccaj:109800443 401.749