Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1944 ATGGCTTCTCTAGGCAACCCAAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGATTTTGTAGCCTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCGCCTCCTCCCTTTGAATTTCCCGATGATGATTCAAGTCCAAATTTCTCCCCTCTAGTTATTGCAGTCATCGGGGTCTTGGCCAGTGCTTTTCTCCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCACCAGAGAATATTCATCACAAAGTGAAGACCACGAAGCAAATGTTGAATTGGAAGAGGATCACAACCCTTCACTCCACGAGCCTTGGCATGCTCCAACCATTGGCTTAGACGAGGCTTTGATCAAGTCCATAACAGTTTGCAAGTACAAGAAGGGTGATGGGTTGGTTGAGGTAACAGATTGCCCCGTTTGTCTCCGCGAGTTTCAAGATGATGAAAGTGTTAGACTCTTGCCTAAGTGCAGCCACGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAGTCTCACTCTAGTTGCCCTCTTTGTCGTGCTAGCATATTCACCTTCAATGCTGCAGCACTTTATGCTTCTGCCCCAGTCATGGAACTCCCTTCAAGGAACGAAACTTCTTCAGAAAACCAACATGCGGATGAAAACGTAGCTGTTGCAAGGGACAGTGAATTGGATGCTGTGGAAGAAGATGTCACATATGGTGGAGCAGTTCCAAAGACTGCATTGCGGGCTTTTAGTGATCTAGGCAATTTGAGGGGAAGGCATAGTGTAATTGAGATTAGAGATGAAGGCTATGACTCCATTAGAAGGTCGGTTTCTATGGATCATTCATTTCAAAGTGGTAGAGGTCTTTCAGTTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGAATGTTCTAATGGGGCTGGTCCATCAAAGGGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTCTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGGTCATTTTCTAGTGGAAGATTCTCCCTTAGTAGAAGTGGCAGAGGAAGGCAAGGGGTTCTGCCTGTCTGA 1089 0.449 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPDDDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGTREYSSQSEDHEANVELEEDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLREFQDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALYASAPVMELPSRNETSSENQHADENVAVARDSELDAVEEDVTYGGAVPKTALRAFSDLGNLRGRHSVIEIRDEGYDSIRRSVSMDHSFQSGRGLSVADVLHVNQEHEECSNGAGPSKGSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRSGRGRQGVLPV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1944 362 MobiDBLite consensus disorder prediction 302 322 - -
Ssu2g1944 362 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Ssu2g1944 362 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 353 IPR044675 -
Ssu2g1944 362 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 353 - -
Ssu2g1944 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Ssu2g1944 362 CDD RING-H2_PA-TM-RING 142 185 - -
Ssu2g1944 362 Pfam Ring finger domain 142 185 IPR001841 -
Ssu2g1944 362 SUPERFAMILY RING/U-box 123 191 - -
Ssu2g1944 362 SMART ring_2 143 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1944 Ssu-Chr2 71952813 71953901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1944 1 322 C3H Transcription Factor Family AT3G03550 43.824 4.15e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1944 - - gmx:100792267 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1944 2 71952813 71953901 Ssu2g1944 2 71952813 71953901 ECH