Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1943 ATGGCAACGTTAGAATCAGCTCTCACCCTGTTCGCACCCCAACGGTTTTCCAATAACTATCGTTTCCCTGCAAAAGCACCGCACTCCATTAAGCTCCATGCTTCCAAGGCCTCTTTCAAAACCGGAAGACTCTGCTTCCAGTTATGCTCCGCTTTGCAAGAGGTAGCGACAACAGAGGAAACACCTGAGCCAACCCAAACAACAGACAACGTCAAGAAGCTCTACGTCGTTAACTTATCTTGGTCTCTGTCGTCGGCAGACATCAAGGACCTCTTTGCCCAATGCGGAACCGTAACCGACGTCGAGataataaagaacaaagatgGGAGGAGCAGGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGATGCTCAGGCTGCTATTGATAAATTTGACTGTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGGGATTCAAGaaacctcctcctcctccacctccTTCGGGTCCCCGTCCTGGAGAGACACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTTactgaaaatttcaaaacaccATTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCCGGACGTTCTGCTGGTTACggatttgtttcttttcttactAAGGAGGAAGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATtcaatgaaaagaaagataaagaagcTGGAAGTGAAAAAGATGAAGACCAAGTTAAAGATGCTGGAAGTGAAGATGAAGACCAGGGTTCTAATGCTCAACTAGAAGaatcataa 846 0.4161 MATLESALTLFAPQRFSNNYRFPAKAPHSIKLHASKASFKTGRLCFQLCSALQEVATTEETPEPTQTTDNVKKLYVVNLSWSLSSADIKDLFAQCGTVTDVEIIKNKDGRSRGYAFVTMASGEDAQAAIDKFDCYELSGRIIRVELAKGFKKPPPPPPPSGPRPGETRHVIYASNLAWKARSTHLRQVFTENFKTPFSARVVFDSPSGRSAGYGFVSFLTKEEAEAAISTVDGKELMGRPLRLKFNEKKDKEAGSEKDEDQVKDAGSEDEDQGSNAQLEES 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1943 281 PANTHER TRANSFORMER-2-RELATED 13 269 - -
Ssu2g1943 281 MobiDBLite consensus disorder prediction 240 281 - -
Ssu2g1943 281 Gene3D - 50 167 IPR012677 -
Ssu2g1943 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Ssu2g1943 281 MobiDBLite consensus disorder prediction 240 270 - -
Ssu2g1943 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 142 IPR000504 GO:0003723
Ssu2g1943 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 242 IPR000504 GO:0003723
Ssu2g1943 281 SUPERFAMILY RNA-binding domain, RBD 72 250 IPR035979 GO:0003676
Ssu2g1943 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 248 IPR000504 GO:0003723
Ssu2g1943 281 PANTHER 29 KDA RIBONUCLEOPROTEIN A, CHLOROPLASTIC 13 269 - -
Ssu2g1943 281 SMART rrm1_1 73 145 IPR000504 GO:0003723
Ssu2g1943 281 SMART rrm1_1 170 244 IPR000504 GO:0003723
Ssu2g1943 281 Gene3D - 168 276 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1943 Ssu-Chr2 71942425 71946221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1943 74 250 Eukaryotic Initiation Factors Gene Family AT4G34110 30.208 1.95e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1943 - - gmx:100793319 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1943 2 71942425 71946221 Ssu2g1943 2 71942425 71946221 ECH