Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g1943 | ATGGCAACGTTAGAATCAGCTCTCACCCTGTTCGCACCCCAACGGTTTTCCAATAACTATCGTTTCCCTGCAAAAGCACCGCACTCCATTAAGCTCCATGCTTCCAAGGCCTCTTTCAAAACCGGAAGACTCTGCTTCCAGTTATGCTCCGCTTTGCAAGAGGTAGCGACAACAGAGGAAACACCTGAGCCAACCCAAACAACAGACAACGTCAAGAAGCTCTACGTCGTTAACTTATCTTGGTCTCTGTCGTCGGCAGACATCAAGGACCTCTTTGCCCAATGCGGAACCGTAACCGACGTCGAGataataaagaacaaagatgGGAGGAGCAGGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGATGCTCAGGCTGCTATTGATAAATTTGACTGTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGGGATTCAAGaaacctcctcctcctccacctccTTCGGGTCCCCGTCCTGGAGAGACACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTTactgaaaatttcaaaacaccATTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCCGGACGTTCTGCTGGTTACggatttgtttcttttcttactAAGGAGGAAGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATtcaatgaaaagaaagataaagaagcTGGAAGTGAAAAAGATGAAGACCAAGTTAAAGATGCTGGAAGTGAAGATGAAGACCAGGGTTCTAATGCTCAACTAGAAGaatcataa | 846 | 0.4161 | MATLESALTLFAPQRFSNNYRFPAKAPHSIKLHASKASFKTGRLCFQLCSALQEVATTEETPEPTQTTDNVKKLYVVNLSWSLSSADIKDLFAQCGTVTDVEIIKNKDGRSRGYAFVTMASGEDAQAAIDKFDCYELSGRIIRVELAKGFKKPPPPPPPSGPRPGETRHVIYASNLAWKARSTHLRQVFTENFKTPFSARVVFDSPSGRSAGYGFVSFLTKEEAEAAISTVDGKELMGRPLRLKFNEKKDKEAGSEKDEDQVKDAGSEDEDQGSNAQLEES | 281 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g1943 | 281 | PANTHER | TRANSFORMER-2-RELATED | 13 | 269 | - | - | |
Ssu2g1943 | 281 | MobiDBLite | consensus disorder prediction | 240 | 281 | - | - | |
Ssu2g1943 | 281 | Gene3D | - | 50 | 167 | IPR012677 | - | |
Ssu2g1943 | 281 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 72 | 149 | IPR000504 | GO:0003723 | |
Ssu2g1943 | 281 | MobiDBLite | consensus disorder prediction | 240 | 270 | - | - | |
Ssu2g1943 | 281 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 74 | 142 | IPR000504 | GO:0003723 | |
Ssu2g1943 | 281 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 171 | 242 | IPR000504 | GO:0003723 | |
Ssu2g1943 | 281 | SUPERFAMILY | RNA-binding domain, RBD | 72 | 250 | IPR035979 | GO:0003676 | |
Ssu2g1943 | 281 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 169 | 248 | IPR000504 | GO:0003723 | |
Ssu2g1943 | 281 | PANTHER | 29 KDA RIBONUCLEOPROTEIN A, CHLOROPLASTIC | 13 | 269 | - | - | |
Ssu2g1943 | 281 | SMART | rrm1_1 | 73 | 145 | IPR000504 | GO:0003723 | |
Ssu2g1943 | 281 | SMART | rrm1_1 | 170 | 244 | IPR000504 | GO:0003723 | |
Ssu2g1943 | 281 | Gene3D | - | 168 | 276 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g1943 | Ssu-Chr2 | 71942425 | 71946221 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g1943 | 74 | 250 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 30.208 | 1.95e-16 | 77.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g1943 | - | - | gmx:100793319 | 451.44 |