Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1930 ATGAATCTGTGGACGGACGAGAACTCGTCGGTGATGGAGGCCTTCATGTCGTCCTCCGATCTCTCGTCCATCTGGCCCCCGCCGGCGCCGCCGCAGTCGGCGGCGGTGTTCAACCAGGACACGCTCCAGCACCGCCTCCAGGCCCTGATCGAGGGCGCCAGGGAGACGTGGACCTACGCCATCTTCTGGCAGTCCTCCTACGACTACTCCGGCACCTCCCTCCTCGGGTGGGGCGACGGTTACTACAAAGGCGACGACGACAAAGCCAAGGCCAAAGCCAAAGCCAAGGCCACCTCCGCCGCGGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAACTGAACTCCCTCATCTCCGGGTCCTCCGCCGTTGCCTCCGACGACGTGGACGAAGAGGTCACCGACACCGAGTGGTTCTTCCTCGTCTCCATGACCCAATCCTTCGTCAACGGCGGCGGGCTGCCCGGGCAAGCCTTCTTCAGCTCCAACCCGGTCTGGGTCACCGGCGCCGACCGCCTCACGGCCTCCGCCTGCGAGAGGGCGCGCCAGGGACGCGTGTTCGGCTTGCAAACCCTAGTTTGCATACCCTCCGCAAACGGCGTCGTTGAGCTCGGGTCCACGGAGTTAATTTACCAGAACCCGGATCTGATGAACAAGGTCAAGGTTCTCTTCAATTTTAGTAACAACAACTTCGATATGGGCTCTTCTTGGCCCGCTAGTAGTGCCGATCAAGGAGAAAACGACCCTTCCTCGCTCTGGCTCAACGATCCCGAGGTTAGGGATTCGATTAACACTGTTGCGGCCACTCCTTCCGTTTCGGTTCCTGCGCATGCTCACGGAATCTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCTGGGTCGAGTACTTTAACCGAAACCCCAAGTTCTATTCATGCTATTCCGCAGAACCAGAACATGTTCTCGAGGGAATTGAACTTCTCCGAGTACGGTGCCAACAATCACAACCAGCATTCCCTGAAGCCGGAATCCGGCGAGATTCTCAGCTTCGGCGAGAGCAAGAGGAGCTCTTACGGCGGCGTGAATGGGAATTCCAATTCACATTTCTTCTCCGGTCAGTCGCCgtttgctgctgctgctgccaCTGCCACTGCCACGGAtgagaataacaacaacaacaacacaacaacagcaacggGAAGAGAAGGTCGCCGAATTCGCGCGGCAGCAACGACGACGGAATGCTCTCGTTCACCTCCGGCGTGA 1248 0.5633 MNLWTDENSSVMEAFMSSSDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARETWTYAIFWQSSYDYSGTSLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSAVASDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFFSSNPVWVTGADRLTASACERARQGRVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPASSADQGENDPSSLWLNDPEVRDSINTVAATPSVSVPAHAHGISKTMQLESSIQTPGSSTLTETPSSIHAIPQNQNMFSRELNFSEYGANNHNQHSLKPESGEILSFGESKRSSYGGVNGNSNSHFFSGQSPFAAAAATATATDENNNNNNTTTATGREGRRIRAAATTTECSRSPPA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1930 415 MobiDBLite consensus disorder prediction 374 395 - -
Ssu2g1930 415 PANTHER MYC 32 378 IPR045084 GO:0003700|GO:0006355
Ssu2g1930 415 MobiDBLite consensus disorder prediction 236 255 - -
Ssu2g1930 415 MobiDBLite consensus disorder prediction 236 250 - -
Ssu2g1930 415 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Ssu2g1930 415 MobiDBLite consensus disorder prediction 374 415 - -
Ssu2g1930 415 PANTHER TRANSCRIPTION FACTOR MYC2 32 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1930 Ssu-Chr2 71730373 71731620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1930 1 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.435 3.54e-121 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1930 K13422 - gmx:100776289 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1930 2 71730373 71731620 Ssu2g1930 2 71730373 71731620 ECH