Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1929 ATGGACAAGGCATCACTTCTCGGCGACGCCATATCCTACATCACGGAGCTGAAGTCCAAGCTTCAAACCCTGGAATCGGACAAAGACGGATTGCAGAAGCAACTCGATGGAGTGAAGAGGGAACTCGAGAAGACCACCGAGAACGTTTCTCTTAATCATGCGGCTAGTAGTAATAACAAGTCGTCGAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATCGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCGGCGGCGAGGTTGATGGCGGCGCTGATGGAGCTGGACCTGGACGTGAACCACGCCAGCGTGTCGGTGGTGAACGATTTGATGATCCAACAGGCGACGGTGAAGATGGGGAGTCGGTTTTACACGCAGGACCAGCTTCGTTCGGCATTGTCGGCTAAGGTTGGGGATGTACGATGA 450 0.5311 MDKASLLGDAISYITELKSKLQTLESDKDGLQKQLDGVKRELEKTTENVSLNHAASSNNKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVNHASVSVVNDLMIQQATVKMGSRFYTQDQLRSALSAKVGDVR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1929 149 PANTHER MYC 1 145 IPR045084 GO:0003700|GO:0006355
Ssu2g1929 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 38 IPR036638 GO:0046983
Ssu2g1929 149 Gene3D - 1 50 IPR036638 GO:0046983
Ssu2g1929 149 Coils Coil 14 48 - -
Ssu2g1929 149 PANTHER TRANSCRIPTION FACTOR MYC2 1 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1929 Ssu-Chr2 71729678 71730127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1929 1 148 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 63.816 1.15e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1929 K13422 - gmx:100776289 234.187