Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1922 atGGGAGATGTGGCAAAGGACCTAACAGCTGGGACCGTTGGAGGGGCAGCGCAATTGATAGTTGGACACCCATTTGACACCATCAAGGTCAAGCTCCAAAGCCAGCCTACACCACTCCCTGGCCAGCTTCCCAAGTATTCTGGTGCAATTGATGCTGTCAAGCAGACGGTGGCAGCTGAAGGCCCAAGGGGTTTATACAAGGGTATGGGAGCCCCACTTGCTACAGTAGCCGCCTTCAATGCTGTCCTGTTTACAGTTAGGGGACAAATGGAAGCATTACTGAGGTCGCATCCCGGTGCTACCCTCACAGTAAATCAGCAGGTTATTTGTGGAGCTGGAGCTGGAGTTGCTGTTTCCTTTCTAGCTTGCCCTACTGAATTGATCAAGTGCAGATTGCAAGCACAAAGTGCACTAGCTGGCTCCGGAACAGCTGCAGTGGCAGTGAAATATGGGGGACCCATGGATGTGGCCAGGCAAGTTCTGAGGTTAGAAGGGGGCATAAAAGGTCTTTTCAAGGGCTTGGTTCCCACAATGGCACGCGAAGTACCTGGAAATGCTGCAATGTTTGGTGTATATGAAGCATTAAAGCAATTACTTGCAGGTGGCACTGATACCGCAGGACTGGGTAGAGGTTCTCTGATGCTTGCTGGAGGCTTGGCTGGAGCTGCCTTCTGGCTCACTGTTTACCCAACTGATGTTGTTAAGAGTGTGATTCAAGTAGATGATTACAAAAACCCAAAGTTTTCTGGTTCAATTGATGCTTTCAGAAGAATTTTAGCTTCTGAGGGGTCCAAAGGCCTTTATAAGGGTTTTGGTCCGGCAATGGCCCGAAGTGTTCCTGCTAATGCAGCTTGCTTCTTGGCATATGAGATGACAAGATCAGCTCTGGGATGA 894 0.4955 MGDVAKDLTAGTVGGAAQLIVGHPFDTIKVKLQSQPTPLPGQLPKYSGAIDAVKQTVAAEGPRGLYKGMGAPLATVAAFNAVLFTVRGQMEALLRSHPGATLTVNQQVICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGTAAVAVKYGGPMDVARQVLRLEGGIKGLFKGLVPTMAREVPGNAAMFGVYEALKQLLAGGTDTAGLGRGSLMLAGGLAGAAFWLTVYPTDVVKSVIQVDDYKNPKFSGSIDAFRRILASEGSKGLYKGFGPAMARSVPANAACFLAYEMTRSALG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1922 297 Gene3D Mitochondrial carrier domain 2 296 IPR023395 -
Ssu2g1922 297 SUPERFAMILY Mitochondrial carrier 3 290 IPR023395 -
Ssu2g1922 297 Pfam Mitochondrial carrier protein 214 296 IPR018108 -
Ssu2g1922 297 Pfam Mitochondrial carrier protein 102 200 IPR018108 -
Ssu2g1922 297 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Ssu2g1922 297 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 297 - -
Ssu2g1922 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 102 198 IPR018108 -
Ssu2g1922 297 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 297 - -
Ssu2g1922 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Ssu2g1922 297 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 295 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1922 Ssu-Chr2 71623649 71624942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1922 22 291 Antiporters AT1G79900 33.935 5.53e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1922 K15109 - gmx:100781634 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1922 2 71623649 71624942 Ssu2g1922 2 71623649 71624942 ECH