Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1916 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGATGAGCGGAGCAAAGTGTCGTCGACCGTAGCGTCTGGCTCTTCGCAATCCTTAGACTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAGCGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCTACTGTGCCAAGCTTGTGTGATGCGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGGTCCCAATCACCTGAAAGAGAACCGGATCTTTTCTCTCTGAGCTCAGCTAAGCTTGATGAGAAGCCACTGTTTCCTTTGCTTCCTACTAAAGATGGAATATGCTCGTCGTCACAGAAAACTGTTGTTGTTTCGGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATACAGGGATGAACGCAATGCTATCATCTAGGCCTTCTGGAGCTCAACCTTCTACAATGAAAGAAATGCCAAGCAAGTTGCAAGAAAGGCCTTGTTCAACCAATAATGGTACCGGTAATAACCACACAGGTGCTTCTATCCGTGGCAGTGCACCAGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCGATGGCCACCACCTCCAACAAGAACAATGATGAAGTGGACGGAAAACCAGGTGTTGGTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTGGATCTAAGAAATTATACAACATATCAGGAACTTTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGGTCCCATGGAGCTCCGGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGATCTTCTGCACGGTTCAGAGTATGTCCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTGGGGATGTACCGTGGGAGTAAGTTCTTTGAAATTCTCTCTGTGCTTTGTCAGTTTTGGCTTCTCATTATATTTTCTAGTAATAGTGACTATAGTTGTTTCTGA 1062 0.4623 MSPPAVVTEEDERSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLCDAKKENMNLKATELRLGLPGSQSPEREPDLFSLSSAKLDEKPLFPLLPTKDGICSSSQKTVVVSGNKRGFADTMDGFSQGKFTGNTGMNAMLSSRPSGAQPSTMKEMPSKLQERPCSTNNGTGNNHTGASIRGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGMYRGSKFFEILSVLCQFWLLIIFSSNSDYSCF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1916 353 Pfam AUX/IAA family 75 321 IPR033389 -
Ssu2g1916 353 ProSiteProfiles PB1 domain profile. 238 339 IPR000270 GO:0005515
Ssu2g1916 353 SUPERFAMILY CAD & PB1 domains 237 321 - -
Ssu2g1916 353 MobiDBLite consensus disorder prediction 156 197 - -
Ssu2g1916 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 322 IPR003311 GO:0005634|GO:0006355
Ssu2g1916 353 MobiDBLite consensus disorder prediction 156 207 - -
Ssu2g1916 353 PANTHER AUXIN-INDUCED PROTEIN 13 322 - -
Ssu2g1916 353 MobiDBLite consensus disorder prediction 1 29 - -
Ssu2g1916 353 Gene3D - 234 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1916 Ssu-Chr2 71465023 71466427 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu2g1916 AUX_IAA 1.2e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1916 K14484 - gmx:547502 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1916 2 71465023 71466427 Ssu5g1187 5 39008296 39011728 PCT