Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1913 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAACTACTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTAGCTTCTTTGAATCCCTCATTTGCTGCATTTTCAACACCACTAGACCACAGATTTGAATGTCCTTATGGAAGTGAAGCAGCATACCCTTTTGTTGATGGGTTCACATTGCCAGAGCTTGATTCATCTTACACCATGAATGATGAGTCAGCACCACTTTTGCCACAAGAAGATAACCCTTCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAACAAACAAAAACTGGCTGCAAAATTGAGGAACAAGTGACAGATATTCCAGTCTTCAACATGGGCATGTGTGGAGAGAAAAAGCCCAAATCCAAAAAACTAGAAGGGCAGCCCTCAAAGAATCTCATGGcagaaagaaggagaagaaagcGTTTGAATGACCGCCTTTCCATGCTAAGGTCAATTGTCCCTAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGATACCATTGATTACAtgaaagagcttctagaaaggATAGGAAAGttgcaagaagaagaaatggaggAGGGAACAAATCAGATAAACCTCTTGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGtttgaTGTTGAGAGAAGAGACCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCGGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTCGAGATTCATCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGCAGCCGAGCAGAGAAATTGTATGAGCCCGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 996 0.4016 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSGWSFDSFDENQGLASLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTLPELDSSYTMNDESAPLLPQEDNPSLEDEEFGFLGSDNQSLEQTKTGCKIEEQVTDIPVFNMGMCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNQINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEAAEQRNCMSPEEIKQALFRNAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1913 331 PANTHER - 2 331 - -
Ssu2g1913 331 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Ssu2g1913 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Ssu2g1913 331 CDD ACT_UUR-ACR-like 257 298 - -
Ssu2g1913 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 331 - -
Ssu2g1913 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Ssu2g1913 331 Gene3D - 150 223 IPR036638 GO:0046983
Ssu2g1913 331 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1913 Ssu-Chr2 71397880 71399266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1913 149 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.945 1.97e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1913 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1913 - - gmx:100806571 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1913 2 71397880 71399266 Ssu5g1184 5 38735272 38736662 PCT