Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1908 ATGACTCATGTCAATGGCCATCGTGTTGAAACGGTGATTGACATAAAGAAACCACCCGTGAGCTTCACTGGGGGTCTTGTGTTTGAGTGCCTCACTTACACCGTGACAAAGACGAAGGAGGTTGAGGGGAAGTCGTCGAAGGAAGAGGTGGACTTGCTGCGTGATATCACTAGTTATGCACCAAAGGGTTGTGTCACTGCAGTGATGGGCCCTAGTGGCGCGGGAAAGTCCACTCTCTTGGATGGCCTTGCTGGGAGGATTGCCAGTGGGAGCCTTAAAGGGAGGGTCTCCTTGGATGGTGCGACTGTGAGCGCAAGCTTGATCAAAAGAACTTCTGCATACATCATGCAGGAGGATAGGCTTTTCCCAATGCTTACTGTCTATGAGACTTTGATGTTTGCTGCTGATTTCCGCCTCGGCCCACTCTCACTTACTGATAAGAAACAGAGGGTGGAGAAGCTCATTGAGCAGCTTGGCTTAACGTCATCTCGGAACACGTACATAGGAGACGAAGGCTCAAGAGGGGTGTCAGGTGGAGAGCGTCGCCGGGTGTCAATCGGCGTGGACATCATCCACGGACCCTCACTGCTGTTTCTGGACGAGCCAACTTCGGGACTAGACTCCACCAGTGCTCACAGCGTGATCGAAAAAGTGCACGACATCGCACGCAGCGGCAGCACCGTGATTCTCACCATCCACCAGCCCTCATCCAGGATCCAACTTCTTCTCGACCATCTCATCATCCTCGCGAGAGGCCAGCTCATGTTCCAAGGGTCACCTCAGGACGTGGCTCTCCACTTGGCTCGCATGCCACGCAAGGTCCCCAAGGGAGAAAGCCCTATCGAGCTTCTCATTGACGTCATCCAAGAGTATGATCAGTCTGATGTCGGAGTTGAGGCACTTGCTGAGTTCGCACGCACTGGGGTGAAGCCCCCTCCTTTGTCCCACACGGACCAACAACACTCACCGTCTTCTCTTGCGTCCCCACACCCTAGCCGTAGATATGAGGAAAATTCCCACGACCTCTCTTACTCCTCGCAAGTCAGTAGAAGGGCCACAGACGATTTTGATCACAGTCTGAGAAGTCCATATAACAACACATCAATGTCATGGAGCACTGGTAATAGTGCAGCGTTTCTGAAATTCACACCTTCACGACTTAAGAATGATCACAAGCTGCAAAATACGGcaagAAATGCTTCACCTGGTTACTACACATACTCGAGTGAAATGCTCCAAGCCACTCCAACACCCCATAGCAGTGACTACACAGTGAATGAGAACGACTACCTCACTCCCTCAAATGGCACACAAGAACACCTTGGCCCAAAGTTTGCAAATTCTTATCTAAAAGAGACTTGGGTACTTATGCGGCGCAACTTCATAAATATCAGGCGCACCCCTGAACTTTTCTTGTCAAGACTGCTGGTGCTCACCTTCATGGGCTTCATGATGGCCACCATGTTCCACAACCCCAAAGATAATTTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACAGTGtgcctcttcttcttctcttccaaTGATGCTGTCCCGGCCTTCATCCAAGAAAGGTTCATCTTCATAAGGGAAACTTCTCACAACGCCTATAGAGCTTCCACTTATACCATTGCAGGCCTAATCACTCACAtgccatttatttttctccaaGCACTTGTCTATGCGGCCCTTGTTTGGTTTGCTCTAAAACTTCGCGGCCATTTCCTTTACTTCTTGCTTGTTCTCTTCGTTTCTCTTCTGTCAACCAATTCATTTGTTGTGTTTGTGAGCTCAGTGGTGCCAAACTACATCTTGGGTTATGCTGTGGTTATTGCCTTCACGGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAACAGCCATGACATTCCCAAGTATTGGCGTTGGATGAACAAAATTTCAACGATGACGTACCCTTATGAGGGGCTCTTGATGAACCAGTACCAGACCAATAAAACCTTTGGGGATATTTCAGGTTTTCAAATCTTGAATAGTCTTCATATTGGGACTCATAAGAAGAGGACAATTGTGCTTATAATGTTTGGTTGGGCTGTGCTATAtaggattttattttacttagtCCTTCGTTTTGCATCAAAAAACCAGAGGTCGTAG 2145 0.4737 MTHVNGHRVETVIDIKKPPVSFTGGLVFECLTYTVTKTKEVEGKSSKEEVDLLRDITSYAPKGCVTAVMGPSGAGKSTLLDGLAGRIASGSLKGRVSLDGATVSASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSLTDKKQRVEKLIEQLGLTSSRNTYIGDEGSRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPQDVALHLARMPRKVPKGESPIELLIDVIQEYDQSDVGVEALAEFARTGVKPPPLSHTDQQHSPSSLASPHPSRRYEENSHDLSYSSQVSRRATDDFDHSLRSPYNNTSMSWSTGNSAAFLKFTPSRLKNDHKLQNTARNASPGYYTYSSEMLQATPTPHSSDYTVNENDYLTPSNGTQEHLGPKFANSYLKETWVLMRRNFINIRRTPELFLSRLLVLTFMGFMMATMFHNPKDNLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGLITHMPFIFLQALVYAALVWFALKLRGHFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAVVIAFTALFFLFCGYFLNSHDIPKYWRWMNKISTMTYPYEGLLMNQYQTNKTFGDISGFQILNSLHIGTHKKRTIVLIMFGWAVLYRILFYLVLRFASKNQRS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1908 714 Gene3D - 38 270 IPR027417 -
Ssu2g1908 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 276 IPR003439 GO:0005524
Ssu2g1908 714 PANTHER ABC TRANSPORTER G FAMILY MEMBER 19 8 708 - -
Ssu2g1908 714 Pfam ABC transporter 54 204 IPR003439 GO:0005524
Ssu2g1908 714 SMART AAA_5 62 260 IPR003593 -
Ssu2g1908 714 MobiDBLite consensus disorder prediction 313 332 - -
Ssu2g1908 714 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524
Ssu2g1908 714 MobiDBLite consensus disorder prediction 308 352 - -
Ssu2g1908 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 264 IPR027417 -
Ssu2g1908 714 Pfam ABC-2 type transporter 453 658 IPR013525 GO:0016020|GO:0140359
Ssu2g1908 714 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 8 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1908 Ssu-Chr2 71300477 71304092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1908 46 349 Calmodulin-binding Proteins AT2G36910 24.756 3.66e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1908 K05681 - gmx:100804809 1181.39