Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1907 ATggaattcaaaagaaattttatgATTATGATGGAGTTACCAGATATTTGGATATTAAGACTGGTTGTGGCATGTGCTCTTTGTCTGCATATATTTATCAGATCGGCTTCTGCAACTGAAGGGTTTGAAAGCATAGCATGCTGTGCTGATTCAAATTACACAGATCCACGGACCACCTTAAATTACTCAACAGATTACACATGGTTCTCTGATAAAGGAAGTTGTAGAAGAACAGAAATTGGATTAAATCATAGAAGCAATGAAAAAGTTCGAGTGTTTTTTATAGATGAAGGAAAGAGATGTTACAATTTGCCAACAATTAAGAATAAAGTATATCTGATAAGGGGCACATTTCCCTTCAACAGTGTAAATTCTTCCTTTAATGTTTCAATTGGGGTAACACCATTAGGTGCAGTGAGATCATCCAGGCTCCAGGACATGGAAATTGAGGGAGTTTTCAGAGCTACCAAAGATTACATAGACTTCTGCTTAGTGAAGGGGGAGGTTAATCCCTTTATTTCTCAGCTTGAATTGAGGCCATTGCCTGAAGAGTACCTGAATGATTTGCCTGCCAGTATTTTAAAGCTGATAAGCAGAAATGGTCTTTGGGGCACAAAAGATGAAATCAGgTTCCCAATTGACCCAAGTGATAGAATCTGGAAAGCAAATTCAAGTCCATCATCTGCTCTCCTATTGTCTAACAATGTTAGCAATTTTGACCTCAAATCCAATGTGACACCACCTCTACAAGTCCTACAGACAGCTCTTACCCACCCTGAGCAATTGCAGTTCATCCACAGTGACCTTGACTCTGAGCATTATGAGTATCGTGTATTTCTCTACTTCCTTGAATTAAATAGCACTGTCAAAGCAGGCAAAAGGTTGTTTGACATCTATGTTAACAGTGAGATTAAAAAGGAGAGATTTGACATATTGGCTGGAGGGTCCAACCATAGATACACTGTCTTGAACGTTTCAGCAAATGGATTACTTAATGTAACCTTGGTCAAGGCATCTGGAGCTGAGTTTGGACCCCTTTTGAATGCTTATGAGATCCTGCAGATGCGATCATGGATTGAAGAAACCAACCAAAACGATGTGGAAGTGATTCAGAAGATAAGAGAAGAACTGTTGTTGCAAAACCAAGACAATAAAGCGCTAGAGAGTTGGACTGGAGACCCTTGTTTTTTCCCCTGGCAAGGAATAGCATGTGATGGTTCAAATGGTTCGTCTATTATCACTAAACTGGATCTTTCCTCAAATAATTTCAAAGGATCAATTCCTTCCAGTGTCACTGAGAAGACCAACTTAAAACTACTGAACCTGAGCCACAACAGTTTCGATGGTTATATCCCCTCATTTCCGCTGTCCTCCTTGTTGATATCAATAGATCTGAGCTACAATGATCTTATGGGATCACTTCCAGAATCAATTGTCTCACTGccatatttaaaatcattGTATTTTGGCTGCAACCAACACATGAGCGAAGAGGAACCAGCAAAATTGAACAGTTCAATAATCAATACAGATCATGGAAGATGCAAAGCAAAAGAACCTAGATTTGGACAAGTATTCATTATTGGTGCTATTACATGTGGATCGCTTTTGATTACTTTGGCCGTTGGAATCATTTTTGTTTGCCGCTACAGAAAAAAGTTGATTCCATGGGAAGGATTTGGTGGAAAGAACTACTTAATGGAAACAAatGTAATATTCTCTATGCCTAGCAAAGATGATTTCTTAATAAAGTCCGTAGCAATTCAAACATTCACTTTGCAAGATATAGAGGTGGCCACAGAGAGGTATAAAACTTTGATAGGCGAAGGAGGGTTTGGCTCTGTTTACCGGGGCACTCTAAATGATGGTCAAGAAGTGGCAGTGAAAGTCAGGTCAGCCACATCAACTCAGGGAACTCGAGAATTTGATAATGAGCTAAACCTACTTTCTGCAATACAGCATGAGAACCTGGTGCCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTCGTGTATCCTTTCATGTCCAATGGTTCTTTGCAAGATAGACTATATGGGGAACCtgcaaagagaaaaatattagacTGGCCAACTAGACTCTCTATTGCTCTTGGTGCAGCTCGAGGTTTGGTATATCTTCACACATTTCCGGGACGTTCAGTGATACACAGGGATGTGAAATCAAGCAATATACTTCTGGATCACAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTAATGTTTCCCTTGAAGTAAGAGGAACCGCAGGGTACCTGGATCCTGAGTACTACAAAACCCAACAATTATCTGAGAAGAGTGATGTCTTCAGCTTTGGCGTGGTTTTGCTTGAAATTGTGAGTGGTAGGGAACCTCTCGACATAAAGAGACCACGCAATGAGTGGAGCTTGGTTGAATGGGCTAAACCTTATATAAGAGCATCAAAGATGGATGAAATTGTGGATCCTGGCATCAAGGGAGGATACCATGCAGAGGCAATGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACTCTTCTCAGCATATAGACCATGCATGGTTGACATTGTGCGTGAGTTAGAGGATGCTCTCATCATAGAAAACAATGCATCAGAATACATGAAGTCCATAGACAGCCTTGGAGGGTCCAACCGCTACTCTATTGTCATAGAGAAAAGGGTGCTGCCCTCAACTTCATCAACAGCAGAATCAACCATCACAACCCAAGCCTTGTCCCACCCACAGCCGAGATAG 2793 0.4017 MEFKRNFMIMMELPDIWILRLVVACALCLHIFIRSASATEGFESIACCADSNYTDPRTTLNYSTDYTWFSDKGSCRRTEIGLNHRSNEKVRVFFIDEGKRCYNLPTIKNKVYLIRGTFPFNSVNSSFNVSIGVTPLGAVRSSRLQDMEIEGVFRATKDYIDFCLVKGEVNPFISQLELRPLPEEYLNDLPASILKLISRNGLWGTKDEIRFPIDPSDRIWKANSSPSSALLLSNNVSNFDLKSNVTPPLQVLQTALTHPEQLQFIHSDLDSEHYEYRVFLYFLELNSTVKAGKRLFDIYVNSEIKKERFDILAGGSNHRYTVLNVSANGLLNVTLVKASGAEFGPLLNAYEILQMRSWIEETNQNDVEVIQKIREELLLQNQDNKALESWTGDPCFFPWQGIACDGSNGSSIITKLDLSSNNFKGSIPSSVTEKTNLKLLNLSHNSFDGYIPSFPLSSLLISIDLSYNDLMGSLPESIVSLPYLKSLYFGCNQHMSEEEPAKLNSSIINTDHGRCKAKEPRFGQVFIIGAITCGSLLITLAVGIIFVCRYRKKLIPWEGFGGKNYLMETNVIFSMPSKDDFLIKSVAIQTFTLQDIEVATERYKTLIGEGGFGSVYRGTLNDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKILDWPTRLSIALGAARGLVYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLDIKRPRNEWSLVEWAKPYIRASKMDEIVDPGIKGGYHAEAMWRVVEVALQCLELFSAYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTSSTAESTITTQALSHPQPR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1907 930 PANTHER OS07G0107800 PROTEIN-RELATED 71 891 - -
Ssu2g1907 930 ProSiteProfiles Protein kinase domain profile. 601 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1907 930 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Ssu2g1907 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Ssu2g1907 930 Pfam Protein tyrosine and serine/threonine kinase 605 873 IPR001245 GO:0004672|GO:0006468
Ssu2g1907 930 Pfam Leucine rich repeat N-terminal domain 364 405 IPR013210 -
Ssu2g1907 930 Pfam Malectin-like domain 49 354 IPR024788 -
Ssu2g1907 930 Gene3D Ribonuclease Inhibitor 366 511 IPR032675 -
Ssu2g1907 930 SMART serkin_6 601 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1907 930 CDD STKc_IRAK 607 874 - -
Ssu2g1907 930 Gene3D Phosphorylase Kinase; domain 1 572 676 - -
Ssu2g1907 930 Gene3D Transferase(Phosphotransferase) domain 1 677 890 - -
Ssu2g1907 930 PANTHER OS05G0525400 PROTEIN 71 891 - -
Ssu2g1907 930 SUPERFAMILY Protein kinase-like (PK-like) 582 873 IPR011009 -
Ssu2g1907 930 Gene3D - 206 356 - -
Ssu2g1907 930 SUPERFAMILY L domain-like 380 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1907 Ssu-Chr2 71285343 71293420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1907 28 880 Receptor kinase-like Gene Family AT1G67720 34.347 1.77e-134 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu2g1907 Malectin_like 1.6e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1907 - - gmx:100781986 1654.42