Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1902 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAAAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTAGCAATCCTCTGTGATGCACAAGTTGGCCTTGTGATATTCTCCAGCACGGGAAAGCTTTATGAATATGCCAGCACCTTCAGCATGAAATCAATAATCGAGAGATATAACACATGCAAGGAAGAACATCAACATCTGATAAATCCAGAATCAGAAGTCAAGAGGGAGGCAGAATTTCTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAACTTTATGGTCTGAGTGTTAGAAACCTACAAGATCTAGAGGATCAACTGGAAATGAGTCTCCAAGGTGTACGCATGAAAAAGGAACAAATTCTAAAAGATGAAATCCAAGAGCTGAACCGAAAGGGAAATCTTATTTATCAGGAAAATGTGGAACTTTACAAGAAGGTAAACCTCATTCAACAAGAACACACACAACTATGCAAAAAGGTCTATGGTACAACAGATATGGCGACAACAAGCAGAAATGCATTTGTTCCAGTTCCATATGGTATACAAGCAGGGGGGAATCCACAAGAATTGGTCCAACTTCACTTATGCCAACCTGAGCTAGAAGCTTGTGAGACATCGGACACTGCCACAAAATGA 702 0.4131 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASTFSMKSIIERYNTCKEEHQHLINPESEVKREAEFLRQQLQNLQENHRQLMGEQLYGLSVRNLQDLEDQLEMSLQGVRMKKEQILKDEIQELNRKGNLIYQENVELYKKVNLIQQEHTQLCKKVYGTTDMATTSRNAFVPVPYGIQAGGNPQELVQLHLCQPELEACETSDTATK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1902 233 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1902 233 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 232 - -
Ssu2g1902 233 Coils Coil 84 111 - -
Ssu2g1902 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Ssu2g1902 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu2g1902 233 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1902 233 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Ssu2g1902 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ssu2g1902 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu2g1902 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu2g1902 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu2g1902 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1902 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1902 233 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Ssu2g1902 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1902 Ssu-Chr2 71227008 71251989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1902 1 231 MADS-box Gene Family AT2G22630 59.402 1.28e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu2g1902 K-box 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1902 K09264 - gmx:100778427 374.785