Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1900 ATGGCTTTCCACAACTCAAAATCTAACCTCCTTCAATTTCTAAGTCCCCTTTCCACTCTACTTATGAAATTCCTCATCCCTTTCCTCTTGCTACAACATCACAGTGTCAAGTCACAACAACCATCCCCACTGTCAGCAGACGAAACCGTTTCCTTCGGCTTCTCTCTTTTCGACAAAGATGATCCAAACATATTTTTGATGGGCAATGCCTCAGTATCTGGTGGGGTTCTAAGGTTATCCAACACCGACCAACTTGGCAAACCAGTCCCACACAGTGTTGGCCGAGCAGTGCATGTCACACCCGTACACCTCTGGGACAAAAGCAGTGGAGAACTCGCAGACTTCAGCGCTGGCTTCTCCTTTGTCGTGAACACAAAAGGTTCAACGCTTCATGGTGATGGGTTTGCCTTCTTTCTTGCACCGGTCAACCTTCACTTACCCACAAATTCAAGTGGTGGGTATCTTGGGATTTTTAGCCCAGAAACTGCATTGGACCCTTCAAAAAACCAAATCGTGGCTATTGAGTTTGATAGTTATTCGAATGATTGGGACCCCTATTCACCGTCCCAGTTTCCTCACATTGGAATTGATGTTGACTCCATTAAGTCAGTGGCAACTGTGGCATGGCCAAGTGAACTTGAACCGGAAAATGCTGTAGCACATGCGAGCCTATACTATAACTCCGAGTCCAAGAGATTGAGTGTGTTTGTGGCTTACCCTGGGGACAATAGGAATGCCACTGTCTCAACTATTGTTGATTTGAGGACTGTTTTGCCAGAATGGATCCGAGTTGGTTTCTCTGCCTCCACGGGTGAGTTGGTTGAAACACATGACATTCTTAATTGGTCTTTCGAAGCAGCCTTGTAG 867 0.4614 MAFHNSKSNLLQFLSPLSTLLMKFLIPFLLLQHHSVKSQQPSPLSADETVSFGFSLFDKDDPNIFLMGNASVSGGVLRLSNTDQLGKPVPHSVGRAVHVTPVHLWDKSSGELADFSAGFSFVVNTKGSTLHGDGFAFFLAPVNLHLPTNSSGGYLGIFSPETALDPSKNQIVAIEFDSYSNDWDPYSPSQFPHIGIDVDSIKSVATVAWPSELEPENAVAHASLYYNSESKRLSVFVAYPGDNRNATVSTIVDLRTVLPEWIRVGFSASTGELVETHDILNWSFEAAL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1900 288 Pfam Legume lectin domain 50 285 IPR001220 GO:0030246
Ssu2g1900 288 PANTHER LECTIN 1 288 - -
Ssu2g1900 288 CDD lectin_legume_LecRK_Arcelin_ConA 50 285 IPR001220 GO:0030246
Ssu2g1900 288 PIRSF Plant_L_lectin 19 288 IPR016363 GO:0030246
Ssu2g1900 288 Gene3D - 47 288 - -
Ssu2g1900 288 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 1 288 - -
Ssu2g1900 288 SUPERFAMILY Concanavalin A-like lectins/glucanases 49 286 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1900 Ssu-Chr2 71191338 71192204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1900 49 288 Receptor kinase-like Gene Family AT5G10530 34.146 1.65e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1900 - - gmx:100780546 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1900 2 71191338 71192204 Ssu5g1177 5 38452683 38453450 PCT
Ssu5g1178 5 38466634 38467461 Ssu2g1900 2 71191338 71192204 PCT