Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1899 ATGGCCAACCCAAACTCAAAATTCCATGCAACTCAAAACCCCTTCTCTGTTTTCCTTACGaccttcatctttttctttgcaCTAATCACCAATGTCAAATCAGACTCCTTTTCGTTCAACTTCCCCAGTTTTGAGGCAGGGATTCAAAGCATACTACTCGATGGTGATGCCAAAACAACAGGTGGAGTACTTCAACTCACCAAAAAGGACCAAAACGGCAACCCAACTCGAGACAGCGCTGGCGTTGGCCTCTCAGCATTCTTTGGAGCAATTCATCTCTCCGATAGAAAAAGTGGGGGAGTCGCAGACTTCGTCACCGAGTTCTCGTTTGTGGTGAACACAAAGGGTGCACAACTCCACGGCGATGGGTTCACCTTCTATCTTGCATCACTCGATTTTGATTTCCCAGACAACTCAAGTGGAGGGTTCCTCGGACTTTTCAACAAGGAAACAGCCTTCAACACCTCCATAAACCAAGTGGTTGCTGTTGAGTTTGATAGCTTCGCAAATGAATGGGACCCCGGCTTCCCAGTGTCTGATTCTCCTCACATAGGAATTGACATCAATTCACTTAGGTCCGTGGCAACTACGCCATGGCCACTTGATAGTCAACCACCAGGATCAATAGGAAAGGCACGCATAAGCTATCAATCTTCCTCCAAAATATTGAGTGTCTCCGTGGCTTATCCAAATAGTCCTGTGAAGTTGAATGCCACAGTTTTATCGTATCCTGTTAACTTAGGGGTCGTTCTGTCCGAATGGGTCCTAGTCGGTTTCTCTGGTGCCACTGGTGACTGGGTTGAAACACATGACATTCTTTCATGGTCTTTCAATTCCTCCTTGTAA 846 0.4539 MANPNSKFHATQNPFSVFLTTFIFFFALITNVKSDSFSFNFPSFEAGIQSILLDGDAKTTGGVLQLTKKDQNGNPTRDSAGVGLSAFFGAIHLSDRKSGGVADFVTEFSFVVNTKGAQLHGDGFTFYLASLDFDFPDNSSGGFLGLFNKETAFNTSINQVVAVEFDSFANEWDPGFPVSDSPHIGIDINSLRSVATTPWPLDSQPPGSIGKARISYQSSSKILSVSVAYPNSPVKLNATVLSYPVNLGVVLSEWVLVGFSGATGDWVETHDILSWSFNSSL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1899 281 Pfam Legume lectin domain 37 280 IPR001220 GO:0030246
Ssu2g1899 281 PIRSF Plant_L_lectin 7 281 IPR016363 GO:0030246
Ssu2g1899 281 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 9 281 - -
Ssu2g1899 281 PANTHER LECTIN 9 281 - -
Ssu2g1899 281 CDD lectin_legume_LecRK_Arcelin_ConA 37 281 IPR001220 GO:0030246
Ssu2g1899 281 ProSitePatterns Legume lectins beta-chain signature. 161 167 IPR019825 -
Ssu2g1899 281 ProSitePatterns Legume lectins alpha-chain signature. 251 260 IPR000985 -
Ssu2g1899 281 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 281 IPR013320 -
Ssu2g1899 281 Gene3D - 34 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1899 Ssu-Chr2 71182254 71183099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1899 16 281 Receptor kinase-like Gene Family AT5G10530 35.688 8.34e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1899 - - gmx:100804280 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1899 2 71182254 71183099 Ssu5g1174 5 38253212 38255254 PCT
Ssu5g1177 5 38452683 38453450 Ssu2g1899 2 71182254 71183099 PCT