Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1898 ATGAAGGTGGCATGTCAGGTGAGGAAACGGGTTTCCTTCCAGTGGTGGTTTAGAATGGCTGTGCAGCTCAGCTTAATCTTCCTCGGTGCCTGTTCTGAGAGCATCTCATTCAGaaaaatcaTATCTTCACTTCAATTTTCCAAGCAAGGAAGAGATGAAAACTTTTTGAGAAGAGTTTCGGCGCCTCCTCCTCCTCCAGTCAAGCTGAATACCGAAAATCCCCACCAGGTGGTGATTGGCAACGGCATCGTTTCCCTCAATTTGTCGAAGCCCGAGGGCTATATCATTGGAATATATACTGGGATTCACAATTTACTTGAgcctaaaaataaagaagacGATAGAGGGTACTTTGACGTTGTTTGGAACGAACCAGGAAAACCTGGTATGTTTGAGAGAATCCATGGGACAAGTTTCTCAGTCATAGTAGCAAACGACAATATAGTGGAGGTTTCATTTTTAAGAACTTGGACAGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTACATATTGCGAAGATGCGATTCTGGGTTTTATTCATACGTAGTATTTAATCGACCACCAGGATTACCTGCAGTGGAGGTTGATCAAATTAGGATTGTTTTCAAACTCGACGAAGCCAGGTTCCACTATATGGCCATATCCGATACTAGGCAAAGGAACATGCCATCTATGACAGACAGAATCACGGGTCAACGCCTGGCGTATCCCGAAGCTGTTCTGTTAACCCATCCATATGAAGGACAATTTAGGGGAGAGGTGGATGACAAATACCAATACTCGATTGAGAACAGAGATAACTCTGTTCACGGCTGGATTGCGGAGGATGATTTACCACCCGTGGGTTTCTGGATGATAACGCCCAGTAACGAGTTCCGCAATGCTGGGCCCGTTAAGCAAGACCTCACCTCTCATGTTGGCCCAACTACTCTTTCCATGTTTGTGAGCACTCACTATGGTGGCAAGGAGGTAAACATGACATTTGGTGAAGGGGAGACTTATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACACTGCTCCAAACAAAGCTCAGTTTCGGTCCCTATGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTCAGAAGATGGCCTTATGATTTCATTGGATCAAAAGATTTCCTTCCACCCAATCAACGGGGAACAGTGGCAGGACAACTACAAGTCCAAGATGGGGGAGGGAGAGCTCAACCTGCTAACAATGCTTACATTGGTCTAGCTTTGCCTGGTGATGCAGGATCTTGGCAGACAGAAAGCAAGGGTTATCAATTCTGGACACAAACTGACAGAGATGGACACTTTGTAATCAAAAATATTGTACCTGGGGATTACAACTTGTATGCTTGGGTTCCTGGTTTCATTGGAGATTATAGATATACAGCTAAAATCACCATCAAACCAGGGGGCAACATCAACTTGGACTCACTTGTATATAATCCTCCAAGAAATGGTCCTACCCTATGGGAAATTGGGATCCCCGATCGATCAGCTGCAGAATTCTATGTACCAGACCCTATCCCCAGACTTATGAACAAATTATACCCCAATGATTGCCGAGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAGTTATATCCAAACCATGATCTCGTTTACACAGTTGGTGTTTCTGACTATCATAAGGATTGGTTTTTTGCTCAAGTTACCAGAAGCACAACAAATAAGGGATACGTGCCAACCACATGGCAGATTCAATTCCAACTTCAACATATCATACTAAGTGGAAACTACACACTACAACTGGCCTTGGCATCCGCCACTAATTCCAGATTGAAGGTTAGGTTCAATGAACCGAAAGCTAAGCTTCCCCACTTCTCAACAGGGCTAATAGGCGATGACAATGCCATAGCAAGGCATGGCATCCATGGATTGTATAGGCTATATACTATAGTTGTAGGTAGTAATCATTtggtaaaaggaaaaaacatcATCTATTTGACACAGTCAAAGTCGTAG 2025 0.4296 MKVACQVRKRVSFQWWFRMAVQLSLIFLGACSESISFRKIISSLQFSKQGRDENFLRRVSAPPPPPVKLNTENPHQVVIGNGIVSLNLSKPEGYIIGIYTGIHNLLEPKNKEDDRGYFDVVWNEPGKPGMFERIHGTSFSVIVANDNIVEVSFLRTWTASMKGSSVPINIDQRYILRRCDSGFYSYVVFNRPPGLPAVEVDQIRIVFKLDEARFHYMAISDTRQRNMPSMTDRITGQRLAYPEAVLLTHPYEGQFRGEVDDKYQYSIENRDNSVHGWIAEDDLPPVGFWMITPSNEFRNAGPVKQDLTSHVGPTTLSMFVSTHYGGKEVNMTFGEGETYKKVFGPVFVYLNTAPNKAQFRSLWSDAVEQLSNEVRRWPYDFIGSKDFLPPNQRGTVAGQLQVQDGGGRAQPANNAYIGLALPGDAGSWQTESKGYQFWTQTDRDGHFVIKNIVPGDYNLYAWVPGFIGDYRYTAKITIKPGGNINLDSLVYNPPRNGPTLWEIGIPDRSAAEFYVPDPIPRLMNKLYPNDCRDKFRQYGLWERYTELYPNHDLVYTVGVSDYHKDWFFAQVTRSTTNKGYVPTTWQIQFQLQHIILSGNYTLQLALASATNSRLKVRFNEPKAKLPHFSTGLIGDDNAIARHGIHGLYRLYTIVVGSNHLVKGKNIIYLTQSKS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1898 674 CDD RGL4_N 76 358 - -
Ssu2g1898 674 CDD RGL4_C 501 674 - -
Ssu2g1898 674 SUPERFAMILY Starch-binding domain-like 388 488 IPR013784 GO:0030246
Ssu2g1898 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 72 674 - -
Ssu2g1898 674 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Ssu2g1898 674 Gene3D - 388 488 - -
Ssu2g1898 674 CDD RGL4_M 392 489 IPR029413 -
Ssu2g1898 674 Pfam Rhamnogalacturonate lyase family 66 259 IPR010325 -
Ssu2g1898 674 Pfam Polysaccharide lyase family 4, domain II 413 485 IPR029413 -
Ssu2g1898 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 72 674 - -
Ssu2g1898 674 Gene3D - 132 366 IPR014718 GO:0030246
Ssu2g1898 674 Pfam Polysaccharide lyase family 4, domain III 499 672 IPR029411 -
Ssu2g1898 674 Gene3D - 497 674 - -
Ssu2g1898 674 SUPERFAMILY Galactose mutarotase-like 71 353 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu2g1898 674 SUPERFAMILY Galactose-binding domain-like 496 672 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1898 Ssu-Chr2 71094608 71101820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1898 67 674 Polysaccharide Lyase AT1G09890 55.122 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1898 K18195 - gmx:100781089 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1898 2 71094608 71101820 Ssu5g1173 5 38061738 38113074 PCT