Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1897 ATGAAGGTGGCATGTCAGGTGAGGAAACGGGTTTCCTTCCAGTGGTGGTTTAGAATGGCTGTGCAGCTCAGCTTAATCTTCCTCGGTGCCTGTTCTGAGAGCATCTCATTCAGaaaaatcaTATCTTCACTTCAATTTTCCAAGCAAGGAAGAGATGAAAACTTTTTGAGAAGAGTTTCGGCGCCTCCTCCTCCTCCAGTCAAGCTGAATACCGAAAATCCCCACCAGGTGGTGATTGGCAACGGCATCGTTTCCCTCAATTTGTCGAAGCCCGAGGGCTATCTCATTGGAATATGTACTGGGATTCACAATTTACTTGAgcctaaaaataaagaagacGATAGAGGGTACTTTGACGTTGTTTGGAACGAACCGGGAAAACCTGGTATGTTTGAGAGAATCCATGGGACAAGTTTCTCAGTCATAGTAGCAAACGACAATATAGTGGAGGTTTCATTTTTAAGAACTTGCACAGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTACATATTGCGAAGATGCGATTCTGGGTTTTATTCATACGTAGTATTTAATCGACCACCAGGATTACCTGCAGTGGAGGTTGATCAAATTAGGATTGTTTTCAAACTCGACGAAGCCAGGTTCCACTATATGGCCATATCCGATACTAGGCAAAGGAACATGCCATCTATGACAGACAGAATCACGGGTCAACGCCTGGCGTATCCCGAAGCTGTTCTGTTAACCCATCCATATGAAGGACAATTTAGGGGGGAGGTGGATGACAAATACCAATACTCGATTGAGAACAGAGATAACTCTGTTCACGGCTGGATTGCGGAGGATGATTTACCACCCGTGGGTTTCTGGATGATAACGCCCAGTAACGAGTTCCGCAATGCTGGGCCCGTTAAGCAAGACCTCACCTCTCATGTTGGCCCAACTACTCTTTCCATGTTTGTGAGCACTCACTATGGTGGCAAGGAGGTAAACATGACATTTGGTGAAGGGGAGACTTATAAAAAGGTTTTTGGCCCAGTTTTTGTCTACCTTAACACTGCTCCAAACAAAGCTCAGTTTCGGTCCCTATGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTCAGAAGATGGCCTTATGATTTCATTGGATCAAAAGATTTCCTTCCACCCAATCAACGGGGAACAGTGGCAGGACAACTACAAGTCCAAGATGGGGGAGGGAGAGCTCAACCTGCTAACAATGCTTACGTTGGTCTAGCTTTGCCTGGTGATGCAGGATCTTGGCAGACAGAAAGCAAGGGTTATCAATTCTGGACACAAACTGACAGAGATGGACACTTCGTAATCAAAAATATTGTACCTGGGGATTACAACTTGTATGCTTGGGTTCCTGGTTTCATTGGAGATTATAGATATACAGCTAAAATCACCATCAAACCAGGGGGCAACATCAACTTGGACTCACTTGTATATAATCCTCCAAGAAATGGTCCTACCCTATGGGAAATTGGGATCCCCGATCGATCAGCTGCAGAATTCTATGTACCAGACCCTATCCCCAGACTTATGAACAAATTATACCCCAATGATTGCCGAGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAGTTATATCCAAACCATGATCTCGTTTACACAGTTGGTGTTTCTGACTATCATAAGGATTGGTTTTTTGCTCAAGTTACCAGAAGCACAACAAATAAGGGATACGTGCCAACCACATGGCAGATTCAATTCCAACTTCAACATATCATACTAAGTGGAAACTACACACTACAACTGGCCTTGGCATCCGCCACTAATTCTAGATTGAAGGTTAGGTTCAATGAACCGAAAGCTAAGCTTCCCCACTTCTCAACAGGGCTAATAGGCGATGACAATGCCATAGCAAGGCATGGCATCCATGGATTGTATAGGCTATATACTATAGTTGTAGGTAGTAATCATTtggtaaaaggaaaaaacatcATCTATTTGACACAGTCAAAAGTCGTAGGTCCTTTTGAAGGAGTTATGTATGACTATATCCGCTTAGAAAGTCCTCCAACTAAAGCTACTTGA 2091 0.4304 MKVACQVRKRVSFQWWFRMAVQLSLIFLGACSESISFRKIISSLQFSKQGRDENFLRRVSAPPPPPVKLNTENPHQVVIGNGIVSLNLSKPEGYLIGICTGIHNLLEPKNKEDDRGYFDVVWNEPGKPGMFERIHGTSFSVIVANDNIVEVSFLRTCTASMKGSSVPINIDQRYILRRCDSGFYSYVVFNRPPGLPAVEVDQIRIVFKLDEARFHYMAISDTRQRNMPSMTDRITGQRLAYPEAVLLTHPYEGQFRGEVDDKYQYSIENRDNSVHGWIAEDDLPPVGFWMITPSNEFRNAGPVKQDLTSHVGPTTLSMFVSTHYGGKEVNMTFGEGETYKKVFGPVFVYLNTAPNKAQFRSLWSDAVEQLSNEVRRWPYDFIGSKDFLPPNQRGTVAGQLQVQDGGGRAQPANNAYVGLALPGDAGSWQTESKGYQFWTQTDRDGHFVIKNIVPGDYNLYAWVPGFIGDYRYTAKITIKPGGNINLDSLVYNPPRNGPTLWEIGIPDRSAAEFYVPDPIPRLMNKLYPNDCRDKFRQYGLWERYTELYPNHDLVYTVGVSDYHKDWFFAQVTRSTTNKGYVPTTWQIQFQLQHIILSGNYTLQLALASATNSRLKVRFNEPKAKLPHFSTGLIGDDNAIARHGIHGLYRLYTIVVGSNHLVKGKNIIYLTQSKVVGPFEGVMYDYIRLESPPTKAT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1897 696 Pfam Rhamnogalacturonate lyase family 66 259 IPR010325 -
Ssu2g1897 696 CDD RGL4_N 76 358 - -
Ssu2g1897 696 Pfam Polysaccharide lyase family 4, domain II 413 485 IPR029413 -
Ssu2g1897 696 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 72 693 - -
Ssu2g1897 696 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Ssu2g1897 696 Gene3D - 133 366 IPR014718 GO:0030246
Ssu2g1897 696 CDD RGL4_M 392 489 IPR029413 -
Ssu2g1897 696 SUPERFAMILY Galactose-binding domain-like 496 689 IPR008979 -
Ssu2g1897 696 Gene3D - 388 488 - -
Ssu2g1897 696 Pfam Polysaccharide lyase family 4, domain III 499 688 IPR029411 -
Ssu2g1897 696 CDD RGL4_C 501 689 - -
Ssu2g1897 696 Gene3D - 497 689 - -
Ssu2g1897 696 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 72 693 - -
Ssu2g1897 696 SUPERFAMILY Starch-binding domain-like 388 488 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1897 Ssu-Chr2 70964796 70972166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1897 67 691 Polysaccharide Lyase AT1G09890 55.063 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1897 K18195 - gmx:100781089 1150.58