Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1879 ATGGCGTCGGTGGGTAATCACGTGAAAGAGTTTCCGAGCGACGACGAGGCATCCCCGAGGGCGATTCTGGAAACCCCTGTTTCGGGAACAGAGTCCGACAACAGTGGCGGCAGCGACAGCTTCAGTTCCGGCTCGCCGGAGAAATTGCCGGCGGTGACCGGAAAATCGTCTCCCAGGGAAGGTCACGTGCAGCAATGGAGGTCTATGATCGACGTTTTCAAGTTCAAGTCTGTGCGAAAGTTAACGGCCATTCCTCTGCTTGCGGTGAGCCATGATATCTCTCGAAAGGGCTTCACCAAAAAACTGGCTCGTATTCGAAGTGCCGAAGATAGTATTGATCTTGGGGCTATTCCCGCGAAACCCTCTTGGAGGAACTTCGATTATGAAGAGTTAGCAGCTGCTACTGGTGATTTCAGTTCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTGTACAAAGGCCACTTACCCGATGGTCAAGTTATAGCTGTGAAGAGGATAATGAAGAACGAAAAGGATGCTGCTGATAGAGCAGGTGATTTCTTGATGGAGCTTGGGATTATTGCACACATAAACCACCCAAATGCAACACGCCTTATTGGGTTTGGGATCGACCGTGGCCTCTACTTTGTCCTACAATTTGCTCCACATGGCAGTCTTTCTTCTTTGCTTTTTGGTTCTGAATGCTTGGAGTGGAAGACAAGATTCAAGGTAGCTATTGGGGTGGCAGACGGATTGCATTATCTCCATAAAGAGTGCCCAAGACGAATAATTCATAGGGACATCAAGGCTTCCAACATATTATTAAACGAAAATTATGAAGCTGAGATTTCAGATTTTGGACTGGCAAAGTGGCTCCCAAATAAATGGGCCAACCATGTTGTCTTCCCAATAGAAGGCACATTTGGATATTTGGCTCCAGAGTACTTTATGCATGGAATTGTGGATGAGAAAACTGATGTATTTGCATTTGGAGTTTTGCTATTGGAGCTCATAACAGGTCGTCGTGCTGTTGATTCAAATAGTAGGCAAAGTCTTGTCATCTGGGCCAAGCCACTACTGGACACAAACAATGTAAAGGATATAGCAGACCCCAGGTTAGGAGAGGAATATGATCCTGTTGAAATGAAGCGTGCCATGGTGACTGCTTCCATGTGTCTCCACCATGCATCCTCCAAGCGACCATACATGAATCAGGTTGTGCAGCTACTAAAGGGTGAAGAAACAGTTATAGAACCAAAGCAAAATTTAGTTGCACAAAAGTCTCTCTTGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACTTGAAGGACCTCAATCGCCACAGGCAACTAATCATGGAGTGA 1359 0.4614 MASVGNHVKEFPSDDEASPRAILETPVSGTESDNSGGSDSFSSGSPEKLPAVTGKSSPREGHVQQWRSMIDVFKFKSVRKLTAIPLLAVSHDISRKGFTKKLARIRSAEDSIDLGAIPAKPSWRNFDYEELAAATGDFSSENLVGKGGHAEVYKGHLPDGQVIAVKRIMKNEKDAADRAGDFLMELGIIAHINHPNATRLIGFGIDRGLYFVLQFAPHGSLSSLLFGSECLEWKTRFKVAIGVADGLHYLHKECPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNKWANHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRQSLVIWAKPLLDTNNVKDIADPRLGEEYDPVEMKRAMVTASMCLHHASSKRPYMNQVVQLLKGEETVIEPKQNLVAQKSLLLEACDLEDYTCSSYLKDLNRHRQLIME 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1879 452 ProSiteProfiles Protein kinase domain profile. 138 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1879 452 MobiDBLite consensus disorder prediction 25 50 - -
Ssu2g1879 452 Pfam Protein kinase domain 140 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1879 452 PANTHER OS08G0249100 PROTEIN 10 452 - -
Ssu2g1879 452 MobiDBLite consensus disorder prediction 1 63 - -
Ssu2g1879 452 SUPERFAMILY Protein kinase-like (PK-like) 122 413 IPR011009 -
Ssu2g1879 452 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 10 452 - -
Ssu2g1879 452 Gene3D Phosphorylase Kinase; domain 1 100 213 - -
Ssu2g1879 452 SMART serkin_6 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1879 452 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Ssu2g1879 452 Gene3D Transferase(Phosphotransferase) domain 1 217 424 - -
Ssu2g1879 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1879 Ssu-Chr2 70548433 70552627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1879 126 401 Trihelix Transcription Factor Family AT1G68690 46.503 2.01e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu2g1879 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1879 - - gmx:100818314 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1879 2 70548433 70552627 Ssu5g1157 5 37265384 37271794 PCT