Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1878 ATGGCTCGTGCGACTAACTGGCTATCGTTCTCGCTCTCGCCCATGGAAATGCTCCGAACCTCCGAACCGCAGTTCGTTCAATACGACGCCGCTTCCGCCACTTCTTCTCATCACTACTTCCTCGATAACTTATACACCAACGGGTGGGGGAACGGGAACCTCAAGTCTCAGGTGCTGATGGAGCAGAATCTGAACCAGAGCGACGTGAGTTTCGTGGAATCGTCGTCGCAGTCGCAGAGCGTGGGCCACGCGCCGCCGCCGAAGCTGGAGGACTTTCTCGGCGACTCCTCCGCCGTGATGCGTTACTCCGATAGCCAAACGGAGACGCAGGACTCGTCGCTGACGCACATGTACGACCACCACGGTTCCGCGTACTTCGGCAATCAGCAGGATCTCAAGGCCATTGCCGGATTCCAAGCTTTTTCGACTAACTCCGGCTCCGAGGTCGATGACTCGGCCTCCATCGGAAAAGCCCAACCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCCGGGAACGAGTTCGCCGCGTTCTCCGGCGGAGCCGCCGGCGCCACCGGTACTTTGTCGCTCGCCGTCGCGCAGAGCTCCGAGAAGGCCGTCGTCGCGGCGAATTCCGATAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGCGGACATCTATTTACAGGGGTGTCACTAGGCACCGATGGACAGGTAGATATGAAGCGCATCTATGGGACAACAGTTGCAGAAGGGAGGGTCAAGCCAGGAAAGGGCGTCAagTTTATTTGGGTGGATATGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAATTATCCAAAGGAATTGGAGGAGATGAAACATGcaacaaaacaagaatttattgcatcattgcgaAGGAAAAGTAGCGGGTTTTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATCTGTACTTGGGAACATTCGCAACCGAAGAGGAAGCAGCAGAGGCATACGATATTGCAGCCATAAAGTTCAGAGGTGCAAATGCAGTAACCAATTTTGAGATGAATAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTTGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCAGAGCAGAAAGCTCCTGTGAGCAGCAGTCAGCAGAATCCACAGTGTGCAAACGTGAGTGGCAGCATCAATTTCTCGGCCATTCATCAGCCACTTGCTTCTATCCCTTGTGGAATTCCTTTTGATTCTACAGCAGCATATTATCATCACAACCTTTTCCAACATTTTCATCCTACCAACGCTGGCACAGCAGCTTCTGCTGTTACTTCCGCCAATGCAACTGGACTCACTGCACTGCCACCAGCTGCAGCAGCAGCTGAGTTCTTTATTTGGCCTCATCAGTCCTATTGA 1521 0.5155 MARATNWLSFSLSPMEMLRTSEPQFVQYDAASATSSHHYFLDNLYTNGWGNGNLKSQVLMEQNLNQSDVSFVESSSQSQSVGHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFGNQQDLKAIAGFQAFSTNSGSEVDDSASIGKAQPSEFGTHSIESSGNEFAAFSGGAAGATGTLSLAVAQSSEKAVVAANSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYPKELEEMKHATKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKLSLESEQKAPVSSSQQNPQCANVSGSINFSAIHQPLASIPCGIPFDSTAAYYHHNLFQHFHPTNAGTAASAVTSANATGLTALPPAAAAAEFFIWPHQSY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1878 506 CDD AP2 323 382 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 SUPERFAMILY DNA-binding domain 323 383 IPR016177 GO:0003677
Ssu2g1878 506 CDD AP2 221 290 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 Pfam AP2 domain 222 280 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 Pfam AP2 domain 324 374 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 503 - -
Ssu2g1878 506 ProSiteProfiles AP2/ERF domain profile. 324 382 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 ProSiteProfiles AP2/ERF domain profile. 222 288 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 SUPERFAMILY DNA-binding domain 221 290 IPR016177 GO:0003677
Ssu2g1878 506 PRINTS Ethylene responsive element binding protein signature 364 384 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 PRINTS Ethylene responsive element binding protein signature 223 234 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 503 - -
Ssu2g1878 506 Gene3D AP2/ERF domain 324 384 IPR036955 GO:0003700|GO:0006355
Ssu2g1878 506 Gene3D AP2/ERF domain 222 290 IPR036955 GO:0003700|GO:0006355
Ssu2g1878 506 SMART rav1_2 324 388 IPR001471 GO:0003700|GO:0006355
Ssu2g1878 506 SMART rav1_2 222 294 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1878 Ssu-Chr2 70539188 70543656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1878 87 506 AP2-EREBP Transcription Factor Family AT5G10510 59.127 1.53e-172 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu2g1878 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1878 K09285 - gmx:100777168 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1878 2 70539188 70543656 Ssu5g1155 5 37230236 37235546 PCT