Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1877 ATGGATGCAATCCAAAGAGAGAAACTCTATGTTGCTGTTGGTAATGATGCGCAGGATGGATTTAAGATTTTGAATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTCCATGTGACACACAATATTCTCAAGGATTATGTCCATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAAGAGAAACTACAAATTCTCAGGAAGGATGAGCAGGAGAAAATCAACAAGCTGCTTTCCAAGTATATTGCTTTCTGTGGCAAGGTGCCAGCAGAGATTGTTGAAGTTGAGAAATTTGATGAACCTATGCAAAAGCGCATCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCTTGAAATCCAAAGGTGCCATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTGCCTTCTGTGAATTGTTCATTATTTGTGGGGGGAAGCAAGTTTTCCTCAGAGGAAAGAATGATGAGAAAATCATGGAGGACGATCATGGGGTCATGGTTGCCAGAATGAGAGATAAGGTAACTTTTAAAGATTGGCTAGATAAATGGTTCAATGACAAAACCAACGATCCACAGGATAGAAGTGCATCACTTTCCTCAACCAATTCGGAGTCTCCTGAGAACCAAAACCACTGGGAATTTTACCTCCaggaaattgataattattatcaagaaTTGTTGTCTTCGAAGTCGGAGGAAGGAAGCTGCGGGCCAGATAATGACGACTCACATATTGGCCAAATTGAGCCACATGTCACTGAACAGAACAATTATAATATGAGTGCTGCAGAAAAAATTGAGATCCTGAAAAATAAGCTGAATGAAGCTCAGAAGACCATCCAATTGAAGAGGAAAGAAGCCAAGGACAATATAGAGAGGCACGCAAAAGCTGACTGGGCAATTTGTTTATGCAACAGTCGGGCTGAAGAACTGGAAGGTCGAATAAGGGAAGAGGTGAGTGCAAGGGAGGAGCTAAAGAAGGAAGCGGAAGCGGAGAAGGAACAAACAGAGGAGATGAAAATGGAGGTcgaagagaggaagagaaggctGAGTTCCCTCATGGAGGTGCAGTCGGAGCTGTCGAACAGGCTTCAAATATGGACGGCGGCGAAGACGCGGGCGGAGACGCAGCTAGAGAAGGCGgcgggagagaggagagagatggTGAGGGAGATAGAGGAGTTGAGGAGGCAGAGGGACGTGCTCAACAGAAGGATCGAGTTCTGCAAGCAGAAGGACGCCATCGGAATGGCCGCGAGGCTCGCCGAGACATGCTGCACCTTCAGGGAGTACACGGAGGAGGAGCTCCGGTTGGCCACCGACAACTTTTCCGAGCGCCTCAGGTTGAAGTCCGGCGGGGATTGGACCAGTGTGTACAGAGGACGCTTCAACCATTCTACCGTTGCAATCAAGATGCTCCCTTCTTTGTCCCACCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATGTTCGGCAACCTCATCTGGTTGCCATGGTGGGCTTTTGCTCCGAGCCCAAATGCATAGTTTTGGAATACATGCGCAATGGAAACTTGCGAGACATGCTGTTTTCTAGGAGAAAAAACCGAGCCTTAAGATGGCATGACCGAATACGAATTGCCGCAGAAGTTTGTTCAGGCTTGGGCTTTCTCAATGAAGCTAAGCCGAGGCCTGTTATTCATTGTCATTTGACCCCATCCAAAGTCCTCCTAGACCGCAATTTGGTTGCAAAGATCACGGGCTTTGGGCTTCATGAATGCCATGATGAGCAGTGCAACGTTGAGTCAGATTTGCGGGCCATAGGGGATTTGTTGATGCAACTTTTGACCGGAAGAAATTGGGCTGGGCTCGTCGAGGAGGTGATGACAGTGGATATGGATAGAGAGGCTTTGGCTTGCGTTCTTGATGAGATGGTTGGACAATGGCCATTGGATTTAGCAAAGGAACTTGCAGGCCTGGCTGTGAGGTGCAAGTCCATCAAAAGCAAGCCCAACTCGGAATTGAGCATAGCAAAGGTCTTAGAGGAACTCAATGAGATAAGAAGAAAGGGGGATGAAATACTTGGAATGGAAGGGCGAAAGGCAATCATTGGTGGATGTATAGATAGAGAGGCCTCCAATGATATGCCTAGTGTTTTCCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACATGTGGCAGCAGATGGATTTTCTTATGAGGTGGAAGCAATAGAGCACTGGTTGCAGTCGGGGCATGATACATCACCAATGACAAATTTGAGGCTGAAGCACACATTTCTCACCCCGAATCATACTCTTCGTTCCCTAATTGAGGACTGGCAGACCAACAAATCACCTAAAGTTACACATTAA 2412 0.4502 MDAIQREKLYVAVGNDAQDGFKILNWALKKWNSHPISIVILHVTHNILKDYVHTPFGKLPARSVSEEKLQILRKDEQEKINKLLSKYIAFCGKVPAEIVEVEKFDEPMQKRIIDLIFGLGITKLVMGFSFMKPSLKSKGAISGLFYVHQHKPAFCELFIICGGKQVFLRGKNDEKIMEDDHGVMVARMRDKVTFKDWLDKWFNDKTNDPQDRSASLSSTNSESPENQNHWEFYLQEIDNYYQELLSSKSEEGSCGPDNDDSHIGQIEPHVTEQNNYNMSAAEKIEILKNKLNEAQKTIQLKRKEAKDNIERHAKADWAICLCNSRAEELEGRIREEVSAREELKKEAEAEKEQTEEMKMEVEERKRRLSSLMEVQSELSNRLQIWTAAKTRAETQLEKAAGERREMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLAETCCTFREYTEEELRLATDNFSERLRLKSGGDWTSVYRGRFNHSTVAIKMLPSLSHQHFQSKVRLLGDVRQPHLVAMVGFCSEPKCIVLEYMRNGNLRDMLFSRRKNRALRWHDRIRIAAEVCSGLGFLNEAKPRPVIHCHLTPSKVLLDRNLVAKITGFGLHECHDEQCNVESDLRAIGDLLMQLLTGRNWAGLVEEVMTVDMDREALACVLDEMVGQWPLDLAKELAGLAVRCKSIKSKPNSELSIAKVLEELNEIRRKGDEILGMEGRKAIIGGCIDREASNDMPSVFLCPILQEVMKNPHVAADGFSYEVEAIEHWLQSGHDTSPMTNLRLKHTFLTPNHTLRSLIEDWQTNKSPKVTH 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1877 803 Pfam U-box domain 728 797 IPR003613 GO:0004842|GO:0016567
Ssu2g1877 803 ProSiteProfiles U-box domain profile. 726 800 IPR003613 GO:0004842|GO:0016567
Ssu2g1877 803 Coils Coil 389 430 - -
Ssu2g1877 803 Coils Coil 326 371 - -
Ssu2g1877 803 SUPERFAMILY RING/U-box 724 797 - -
Ssu2g1877 803 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 796 - -
Ssu2g1877 803 Coils Coil 277 311 - -
Ssu2g1877 803 SMART Ubox_2 730 793 IPR003613 GO:0004842|GO:0016567
Ssu2g1877 803 Pfam Protein tyrosine and serine/threonine kinase 471 608 IPR001245 GO:0004672|GO:0006468
Ssu2g1877 803 CDD RING-Ubox_WDSUB1_like 731 772 - -
Ssu2g1877 803 SUPERFAMILY Protein kinase-like (PK-like) 445 655 IPR011009 -
Ssu2g1877 803 MobiDBLite consensus disorder prediction 208 227 - -
Ssu2g1877 803 ProSiteProfiles Protein kinase domain profile. 462 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1877 803 Coils Coil 66 86 - -
Ssu2g1877 803 PANTHER OS02G0152300 PROTEIN 5 796 - -
Ssu2g1877 803 Gene3D Transferase(Phosphotransferase) domain 1 532 611 - -
Ssu2g1877 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 802 IPR013083 -
Ssu2g1877 803 Gene3D Phosphorylase Kinase; domain 1 435 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1877 Ssu-Chr2 70500958 70508453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1877 7 802 U-box Gene Family AT5G65500 50.496 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu2g1877 PK_Tyr_Ser-Thr 3.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1877 - - gmx:100786771 1398.26