Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1870 ATGGCTCTTCCTGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGGCTGCAATAAACATTCGAGGGCAACGGGATGTGGCAAGTTACATTTATTTAGTGCAGGTCCTTCATACCCTATTTCGTTCATGAAACAGGAGTTCATGGGTTTTCAACACCTTTGTCATATAAACAGTCCAACACATACATTATCTTGCAAATCCCGCCCTTTTAAGTGTCATTGTTTTTTAGTGCCAGGCCAACCAAATGAGCTTCCTGCTGTTAAGGTGGCTGCTACAGTGTTATCAAGGTCTTGTAATGTGTTACAAAATAGTCCTATCATAGTACAGTTGATTCCTGCAGTTGGCGTTATCATTTTTGCAGTATGGGGTGTTGGTCCATTATTGTTTCAGACAAGGAAATTACTTTTTCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCACTATATGGTAACTTCTTACCTTCAGCCATTATTATTATGGACCGGAGCAATACTTATTTGCAGAGCATTGGAGCCACTAACTCTACCTTCAGAAACTGGCCAAGTTGTTAAAGAACGGCTTTTGAATTTTGTAAGATCATTGTCAACAGTACTGGCCTTCACCTATTGCTTGGCAAGTGTAATTCAACAAGCGCAAAAATTCTTAGCAGAGGGCACTGATGCAAGTGAGGCGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTATTCTGCGGTATGGATTGCTGCCTTTTCATTGTTCATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGACCTTTCGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACCCATCTAGCCATTAGCCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCCCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGATAACATAAATCCTGAAAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGgaaGCTATACTGTTGGATCTTCTTAGAGTTATCGGCCATCACCGAGCCCGACTTGCAACACCCATCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAACATACCATATGAAGATTCCACATTTGGTCGTGGTGCTGGGACAGTACCTAACCGTCCATTATTAGTGATTGAACCGTCTTACAAGATCAATGGAGATGATAAGACGAAAAGTCGATTGGCACGAGCAGCTGTTGATCAAGATAACAAGGCAGCAGCGCGAACCAAACTTGACACCATGGTTAGAGGAACTCAAGATGACACTGAGGTGGATACCAAAGTTGTGGCATCTAACTCTGATGCAAATGGAAACTCTAAGACAGTTGTGACACCCAGACCTGATCCTGAAGTGGGTGAAAACAAGCCGCTGATATCAGATTCCAATAAGGAAAATGTGGAGGCGCCAGAATCTTCTTCTAAATCCAAAGTAACTGGCTTGGTAGTAGATAATTCAGCCCAGAAGGACATAGATGTCAAACAATCCAAGGGTCAGGCCACTAAAAACATAAAGCCAAATATTGACTCTGACAATGTAGTATCCTCAACTAGCAATGCTGACAAAACTGGTGGACTTAATATGAATATGCCAACAAAACAGCAAGGGGAAAAGAAACCTGCTACACAGCCTCATGCATCCAGGCCTGTTCTTGAAGAGAATATAGTGCTGGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCCATTGATGAGGAGATTGACAATGTGACACCTCGAGAGGCAAAGGAAATGGCTGCATGCCAGGGTGGAAATGGATCTCCAAAGGCTCCAGATGGAAATGACAAGTAG 2148 0.4241 MALPGSLQLSHGLGLCRNLGCNKHSRATGCGKLHLFSAGPSYPISFMKQEFMGFQHLCHINSPTHTLSCKSRPFKCHCFLVPGQPNELPAVKVAATVLSRSCNVLQNSPIIVQLIPAVGVIIFAVWGVGPLLFQTRKLLFQRSDNSWKKSTTHYMVTSYLQPLLLWTGAILICRALEPLTLPSETGQVVKERLLNFVRSLSTVLAFTYCLASVIQQAQKFLAEGTDASEARNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPIRTLQKIYSDADLENIPYEDSTFGRGAGTVPNRPLLVIEPSYKINGDDKTKSRLARAAVDQDNKAAARTKLDTMVRGTQDDTEVDTKVVASNSDANGNSKTVVTPRPDPEVGENKPLISDSNKENVEAPESSSKSKVTGLVVDNSAQKDIDVKQSKGQATKNIKPNIDSDNVVSSTSNADKTGGLNMNMPTKQQGEKKPATQPHASRPVLEENIVLGVALEGSKRTLPIDEEIDNVTPREAKEMAACQGGNGSPKAPDGNDK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1870 715 Gene3D - 299 354 IPR023408 -
Ssu2g1870 715 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Ssu2g1870 715 MobiDBLite consensus disorder prediction 537 556 - -
Ssu2g1870 715 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Ssu2g1870 715 MobiDBLite consensus disorder prediction 571 595 - -
Ssu2g1870 715 MobiDBLite consensus disorder prediction 682 715 - -
Ssu2g1870 715 MobiDBLite consensus disorder prediction 604 653 - -
Ssu2g1870 715 Gene3D - 195 297 - -
Ssu2g1870 715 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 715 - -
Ssu2g1870 715 MobiDBLite consensus disorder prediction 529 662 - -
Ssu2g1870 715 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 715 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1870 Ssu-Chr2 70429952 70439657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1870 9 715 Mechanosensitive Ion Channel Family AT5G10490 55.742 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1870 K22047 - gmx:100789444 1272.3