Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1865 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTCACGTTCTCGAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGTGATGCAGATGTTGCCCTCATAATTTTCTCTTCTACTGGGAAGCTCTTTGAGTACTCCAGCTCAGGAAGCATGAGGGAAATACTTGAAAGACATCATTTGCACTCAAAGAACCTAGCTAGGCTGGAACAACCATCTCTTGAGTTACAGCTGGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCCGAGAAGAGCCATCAACTAAGgCAGCTTAGAGGAGAGGATCTTCAAGGTTTAAACATAGAAGAATTGCAACAACTGGAGGGGTCTCTCGAAACTGGATTGGGCCGTGTAATAGAAAAGAAGGGAGAGAAGATTATGAATGAGATCGCGGATCTGCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTAAAACGTCATGTGGCGGGCATAATTAATGGCCAAAGGCATGGTGGTGCCGAGTCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCAGAGTCAGTCACGTACGTTTGCAACTCCACTGGACCCCCGCAGGACTATGAAAGCTCAGATACATCGCTCAAATTGGGGTTACCGTACTCCGGCTGA 687 0.476 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSGSMREILERHHLHSKNLARLEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLEGSLETGLGRVIEKKGEKIMNEIADLQRKGMLLMEENERLKRHVAGIINGQRHGGAESENFVMDEGQSSESVTYVCNSTGPPQDYESSDTSLKLGLPYSG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1865 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1865 228 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1865 228 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu2g1865 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu2g1865 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu2g1865 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu2g1865 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu2g1865 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Ssu2g1865 228 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Ssu2g1865 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ssu2g1865 228 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Ssu2g1865 228 Coils Coil 151 171 - -
Ssu2g1865 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu2g1865 228 Coils Coil 95 115 - -
Ssu2g1865 228 MobiDBLite consensus disorder prediction 207 228 - -
Ssu2g1865 228 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 225 - -
Ssu2g1865 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1865 Ssu-Chr2 70345885 70351332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1865 1 228 MADS-box Gene Family AT2G22540 70.954 2.83e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu2g1865 K-box 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1865 - - gmx:100808695 426.017