Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1861 ATGATAAGAGGTAGCTTTCCTCAGCCATTCCTCTCTAGGACATACAAAACCAGTTTCTTAAAGCCAAGATCAAAGGCAGAGATCAAATTGTTGGCCGCTAAGAAGCATAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAAGTGTCCTTCCCAACTTAACCAAAAAGGACAAGGCATCAGTTTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCAAAACTGGAAGAAGATAGTTCTGGTAACCCATTAAAGAATGTTAAGTTTCCTGGTGGGGCAGACAAGTTGAATTTGGAAAAATGTAACAACGAGGGCCTAGTGAAGGCCACATTGAGTTGTGAGGATAGTCTGGGATTGATGTCATCAATATCAAGGGCGTTAGGGTCAGTGAAAACCAAAGTGGTAAAAGCTGAGATGGTGAGTGTGGGTGGGAGAACCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGAAATGATGGTCTGGGGATGCTCAAGAGCACTTTGAAGGTTGCCATGCACAAGCCAGCCTTTAAGATGCGGCGCTTTACTCAGTAA 588 0.4388 MIRGSFPQPFLSRTYKTSFLKPRSKAEIKLLAAKKHSEAEKRRRMRINGQYETLRSVLPNLTKKDKASVLAETIKQVKELKKKVSKLEEDSSGNPLKNVKFPGGADKLNLEKCNNEGLVKATLSCEDSLGLMSSISRALGSVKTKVVKAEMVSVGGRTRSVLWVQGLGNDGLGMLKSTLKVAMHKPAFKMRRFTQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1861 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 93 IPR036638 GO:0046983
Ssu2g1861 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Ssu2g1861 195 SMART finulus 37 86 IPR011598 GO:0046983
Ssu2g1861 195 Coils Coil 70 90 - -
Ssu2g1861 195 PANTHER TRANSCRIPTION FACTOR BHLH30 1 192 IPR045847 GO:0003700|GO:0006355
Ssu2g1861 195 PANTHER TRANSCRIPTION FACTOR BHLH131 1 192 - -
Ssu2g1861 195 Pfam Helix-loop-helix DNA-binding domain 34 80 IPR011598 GO:0046983
Ssu2g1861 195 Gene3D - 32 99 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1861 Ssu-Chr2 70267335 70268107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1861 30 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 41.007 1.20e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1861 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1861 - - gmx:102667782 290.426