Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1858 ATGACAAGAAATGGGCTTGTCCCTCCTCAGGGTTGCAGTCTACTAGTTAATGAGCTTTCGGCAAAAGGATCCAACCCCGAACCTAAAAACCCTATTTCCACGTGCACTTCCATACTCTCCCATCGCGGCTTCTCCGCGTGCCGCGACTTCGCCTGCCGCCTTCCCCCCTCCGACTCCGTCGCCCGAGTCCTCGCCGTCGCCGACGTCCTCTCGGCCGCCGACTTCTACTCCGTCCTCCAGCTCCGCCCCTCCGACGGCGGCAACCGCGACCTCGCGCGGCGGCAGTACGCGAAGCTCGCGCTCCTCCTCGACCCGACGAGCCCCGACAAGGTCCCCTTCTCCGACGAGGCCCTCGCACGCGTGCAAGAGGCCCGGCACGTGCTCTCCCACCCCGAACGCCGCGCCCTCTACGACCGCGAGCTCCAACAACGACGACGACGTTTTGGACCGCGTGCCCCTACTGCTGGAGACTCTTCGAGTACGAGAAGAGGTACGAGGATTGCGCGCTGCTGTGCCAGGCTTGCGGGAAAGCGTTCCAGGGAGTGGCGGTGA 552 0.6486 MTRNGLVPPQGCSLLVNELSAKGSNPEPKNPISTCTSILSHRGFSACRDFACRLPPSDSVARVLAVADVLSAADFYSVLQLRPSDGGNRDLARRQYAKLALLLDPTSPDKVPFSDEALARVQEARHVLSHPERRALYDRELQQRRRRFGPRAPTAGDSSSTRRGTRIARCCARLAGKRSREWR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1858 183 MobiDBLite consensus disorder prediction 141 166 - -
Ssu2g1858 183 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 26 145 - -
Ssu2g1858 183 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 26 145 - -
Ssu2g1858 183 Pfam DnaJ domain 74 138 IPR001623 -
Ssu2g1858 183 CDD DnaJ 74 129 IPR001623 -
Ssu2g1858 183 SUPERFAMILY Chaperone J-domain 68 141 IPR036869 -
Ssu2g1858 183 Gene3D DnaJ domain 67 160 IPR036869 -
Ssu2g1858 183 ProSiteProfiles dnaJ domain profile. 74 141 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1858 Ssu-Chr2 70246427 70251498 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1858 32 142 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 34.127 2.49e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1858 - - gsj:114406356 188.734