Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1856 ATGGTTTTACTTCGACAGGACATACAAAACCAGTTTCTTAAAGCCAAGATCAAATTGTTGGCCGCTAAGAAGCATAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCGCCGAAGTGTCCTTCCCAACTTAACCAAAAAGGACAAGGCATCAGTTTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCAAAACTGCAAGAAGATAGTTCTGGTAACCCATTAAAGAATGTTAAGTTTCCTGGTGGGGCAGACAAGTTGAATTTGGAAAAATGTAACAACGAGGGCCTAGTGAAGGCCACATTGAGTTGTGAAGATAGTCTGGGATTGATGTCATCAATATTACGGGCGTTAGGGTCAGTGAAAACCAAAGTGGTAAAAGCTGAGATAGTGAGTGTGGGTGGGAGAACCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGAAATGATGGTCTGGGGATGCTCAAGAGCACTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGGCGCTTTACTCAGTAA 555 0.4324 MVLLRQDIQNQFLKAKIKLLAAKKHSEAEKRRRMRINGQYETRRSVLPNLTKKDKASVLAETIKQVKELKKKVSKLQEDSSGNPLKNVKFPGGADKLNLEKCNNEGLVKATLSCEDSLGLMSSILRALGSVKTKVVKAEIVSVGGRTRSVLWVQGLGNDGLGMLKSTLKIAMHKPAFKMRRFTQ 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1856 184 Coils Coil 59 79 - -
Ssu2g1856 184 Pfam Helix-loop-helix DNA-binding domain 24 69 IPR011598 GO:0046983
Ssu2g1856 184 PANTHER TRANSCRIPTION FACTOR BHLH131 11 181 - -
Ssu2g1856 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 82 IPR036638 GO:0046983
Ssu2g1856 184 SMART finulus 26 75 IPR011598 GO:0046983
Ssu2g1856 184 Gene3D - 20 88 IPR036638 GO:0046983
Ssu2g1856 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 20 69 IPR011598 GO:0046983
Ssu2g1856 184 PANTHER TRANSCRIPTION FACTOR BHLH30 11 181 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1856 Ssu-Chr2 70241180 70242086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1856 19 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 40.000 1.03e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g1856 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1856 - - gmx:102667782 249.21