Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1847 ATGTCTCAGAACACAGACAGCGCCACCTCTAACCTTCTCTGTTCGGAGAACAGTAGCACCTGCTTCAATGATGATTTGGAATGTGATGGCGCAGATGGGTCTAGAATCTCGCATGTCTGGGACCTCGGGTACCTTAACTCTGGACACGAGGGCAGTGGATCGGAGTCCTTAGCGTGTTTTGTGGCGCAGAGTGAGGAAACTGTGAGGGCTATGgttgagagagagagggagcATTTGCCGAGGGAGGATTACCTGAAGAGGCTGAGGAATGGGGAGTTAGACTTGAGTGTCAGGAGGGAGGCTCTTGATTGGATTTGGAAGGCTCATGCTTATTTTGGCTTTGGACCCTTGAGTTTTTGTTTAGCTGTGAACTACCTGGATCGCTTCCTATCGGTTTTTGAGTTACTGAGAGGTGCCAGTTGGACTGTGCAATTGTTAGCTGTAGCTTGCCTGTCAATTGCAGCTAAAATGGAAGAGATTAAAGTGCCTCAATCTGTAGATTTACAGGTTGGAGAACCAAAGTTTGTATTTGAAGCTAAAACCATTCAAAAAATGGAACTGCTGCTATTAAGCACATTGAGATGGAAAATGCGCGCATTAACTCCTTGTTCCTTCATAGACTACTTCCTTGGCAAGATCACTTGTGAGCAGCATCCAGCCAAGTCATCCATTTCAAGATCAGTGCAGCTCATCCTTGGCATAATCAGAGGTATTGACTTACTGGAATTCCGGCCATCTGAAATTGCTGCTGCGGTGGCAATTTCTGTATTAAGCGAATCGCAAGCAAAAGAGATTGATAAGGGCATAACTGATTTCTTAATAGTAGAGAAGGGGAGAGTTCTAAATTGTGTTGAATTGATAAGAGATTTGTCCTTGATCAATGTTGCTGCTAATTTAGGCAGTAAGGTGCCATTTGTGCCCCAAAGTCCTGTTGGGGTGCTGGATGCTGGGTGTTTAAGTTATAAGAGTGATGAATTAACAGTTGGGTCATGTCCAAAGTCTTCACATAATAGTCCAAATCCAAACACTACTAAGAGGAGCAAGCCAGATGGACCTTCTAATGGAACTTTCAACTCATGA 1080 0.4352 MSQNTDSATSNLLCSENSSTCFNDDLECDGADGSRISHVWDLGYLNSGHEGSGSESLACFVAQSEETVRAMVEREREHLPREDYLKRLRNGELDLSVRREALDWIWKAHAYFGFGPLSFCLAVNYLDRFLSVFELLRGASWTVQLLAVACLSIAAKMEEIKVPQSVDLQVGEPKFVFEAKTIQKMELLLLSTLRWKMRALTPCSFIDYFLGKITCEQHPAKSSISRSVQLILGIIRGIDLLEFRPSEIAAAVAISVLSESQAKEIDKGITDFLIVEKGRVLNCVELIRDLSLINVAANLGSKVPFVPQSPVGVLDAGCLSYKSDELTVGSCPKSSHNSPNPNTTKRSKPDGPSNGTFNS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1847 359 CDD CYCLIN 98 190 IPR013763 -
Ssu2g1847 359 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
Ssu2g1847 359 SMART cyclin_7 103 191 IPR013763 -
Ssu2g1847 359 MobiDBLite consensus disorder prediction 327 359 - -
Ssu2g1847 359 Pfam Cyclin, N-terminal domain 68 197 IPR006671 -
Ssu2g1847 359 SUPERFAMILY Cyclin-like 57 197 IPR036915 -
Ssu2g1847 359 Gene3D - 81 198 - -
Ssu2g1847 359 PANTHER CYCLINS 1 344 IPR039361 -
Ssu2g1847 359 Gene3D - 70 285 - -
Ssu2g1847 359 Pfam Cyclin, C-terminal domain 201 291 IPR004367 -
Ssu2g1847 359 PANTHER CYCLIN-D4-1-LIKE 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1847 Ssu-Chr2 70049533 70051517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1847 62 266 Core Cell Cycle Gene Families AT5G65420 60.870 2.58e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1847 K18810 - gmx:100794010 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1847 2 70049533 70051517 Ssu5g1136 5 36794432 36796446 PCT