Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1832 atgcaacCTCATAAGAAGATTCTAGTCAAACCCAACCCGCTTCTGGGCCTCCGAAATCCACCATCAAATTCCTCTGCAGCTACGGCGGCAGAATCCTCCCTCGCTACCCCCGACGGCAAGCTCCGCTACGTCGGCGGTCACACCCGCGTCCTCGCCGTCGACCGCTTCATCCCATTCTCCGAGCTACTATCGAAGCTGGAAGAGCTCTGCGGCGCCTCCGTGAGGCACCTTCGCTGCCAGTTACCCTCCGAAGACCTTGACGCGTTGGTCTCCATCACCTCCGACGAAGATCTCGCCAACCTCATCGAGGAATACGACAGCGTTTCGTCGCTGAAGATCAGAGCCTTCCTCTCGCCGCCGAGATCTCCGAACAAGGTTTGCACTCCTCCGTCGAAATCGGCGttctcctcttcctcctccgCATCGTCGTCGTCGTCATCTTCGTCGTCGTATTGCAGCCCTACCGGCGGCGGTGGCGGTGGCTCTGGCCGGAGGTATATGGCTTCGACGCCGGTGGGCGACCGCTTGCGTCCATCAGATGTCGCCGGCGCCGGCGTATCCGCTCGGCGTGGAGAAATCGAAATCCTCCGGGAGGAATATTCCTCTGCCGCGGTACGGTTACCACCATGCTCATGGGAACGGTGGACACGTTTATCTGATTCACAACGGGAGCCACTGGCAATAGCGTTACGACGTCGTTTAGATGGAATATTGGAATGGAAGTACTGA 729 0.5679 MQPHKKILVKPNPLLGLRNPPSNSSAATAAESSLATPDGKLRYVGGHTRVLAVDRFIPFSELLSKLEELCGASVRHLRCQLPSEDLDALVSITSDEDLANLIEEYDSVSSLKIRAFLSPPRSPNKVCTPPSKSAFSSSSSASSSSSSSSSYCSPTGGGGGGSGRRYMASTPVGDRLRPSDVAGAGVSARRGEIEILREEYSSAAVRLPPCSWERWTRLSDSQREPLAIALRRRLDGILEWKY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1832 242 Gene3D - 40 118 - -
Ssu2g1832 242 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 36 155 - -
Ssu2g1832 242 SMART PB1_new 36 120 IPR000270 GO:0005515
Ssu2g1832 242 SUPERFAMILY CAD & PB1 domains 38 123 - -
Ssu2g1832 242 PANTHER OS05G0427100 PROTEIN-RELATED 36 155 - -
Ssu2g1832 242 MobiDBLite consensus disorder prediction 10 32 - -
Ssu2g1832 242 MobiDBLite consensus disorder prediction 120 183 - -
Ssu2g1832 242 MobiDBLite consensus disorder prediction 127 156 - -
Ssu2g1832 242 MobiDBLite consensus disorder prediction 17 32 - -
Ssu2g1832 242 CDD PB1_UP2 37 117 - -
Ssu2g1832 242 Pfam PB1 domain 38 119 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1832 Ssu-Chr2 69671510 69673346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1832 38 117 MAP Kinase Kinase Kinase AT5G57610 52.941 1.98e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1832 - - gmx:100815157 190.274