Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1830 ATGCCTCTTCTACTCTCCCACACGCCACCTTGTTCACTTCCTCCAATCCTTCCCCACCACAAGCCTCTAATCGCAGCCTCTCAGAAGCGCTTCCCCTTCGCCGCAGCGCGAATTGTTCTCTTCAGTCCTGGATTTACTTCCCGGCGCATTATCGCAGCCCTTCCTCCGAAGTGCGCCTCCATCAACGGCGTCTCCGTTCAGAACAATCCAGAAGCTTCCAGAGAAGTCTACGTTGGCGAGTTTCTCGAGAGGATTCGAAAATGGGTCGGGTTCCTTCCGGCGATTCTGCCCGGCGGACGGTGGTGGGACTTCTCCGACGACGTCGACGTTCAGGTGGTGGCGCAGCCGGTGACCGTGTGGAGCGCTCTCGGCAAAATGTGGGACCTTGTCGCGCGTGACAGATGGGTCATTTTCGCTGCATTCTCTGCTCTCATTGTTGCTGCAGTTTCGGAGATTTCCATACCGCATTTCCTGACGGCTTCCATCTTCTCGGCACAGGGTGCGGACCTTAGTGTTTTTCATGGGAATGTGCGCGTGTTGGTTCTGTTGTGCGTGGTTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGgttaagagaatgagagaaacgttatactcttctcttcttctgCAGGATATATCATTTTTTGACAATGAAACAGTAGGTGATTTGACAAGTCGGCTTGGAGCGGATTGTCAGCAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAACGTTCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAACAAGAACACGGAAGGTATAATTGGTGGCTGGGGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGAGTTTGGAATTTTAGCTTTAACACTCTCTATCATTCGACTCAGGTCATTGCGGTGCTATTTGGGGGAATGTCTATTCTTGCGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATACTGTACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCGGTTGGGGCTAGTGAAAAAGTATTCCACTTAATGGATCTCTCACCTAGCAGCCAATTCTTAGAAAGAGGGGTAAAGTTGCAGAGATTAACGGGGCGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGAAACACGTAAACTTTGTTGTCCATCCTAGCGAGGTGGTTGCAATGGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGCTAGATGATATCCCTATTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAATAGGATTTGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTACTCGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCCCATGACTTTATCTCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTATTAAGTGGTGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTAGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCAAGCAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGAAGGTGGTCAAATTGTTGAGGTTGGTAAACTGTTGATTCATTTTGAATGCCCTAAATATTCATATCAATATTCATTTTTGAAGCTTACCCTTAAAATTTTCATcagccttttttcttttctttttttagtggcttcattaacagtgtaa 2142 0.4323 MPLLLSHTPPCSLPPILPHHKPLIAASQKRFPFAAARIVLFSPGFTSRRIIAALPPKCASINGVSVQNNPEASREVYVGEFLERIRKWVGFLPAILPGGRWWDFSDDVDVQVVAQPVTVWSALGKMWDLVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQGADLSVFHGNVRVLVLLCVVSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEQEHGRYNWWLGKLADISLRQSAAYGVWNFSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFLERGVKLQRLTGRIEFLNVSFHYPSRPTVSVVKHVNFVVHPSEVVAMVGLSGSGKSTLVNLLLRLYEPTNGQILLDDIPIKDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRSVIVIAHRLSTIQAADRIVVMEGGQIVEVGKLLIHFECPKYSYQYSFLKLTLKIFISLFSFLFLVASLTV 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1830 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 453 691 IPR003439 GO:0005524
Ssu2g1830 713 Gene3D - 443 688 IPR027417 -
Ssu2g1830 713 Pfam ABC transporter 472 619 IPR003439 GO:0005524
Ssu2g1830 713 Pfam ABC transporter transmembrane region 139 404 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g1830 713 ProSitePatterns ABC transporters family signature. 591 605 IPR017871 GO:0005524
Ssu2g1830 713 CDD ABC_6TM_TAP 140 427 - -
Ssu2g1830 713 PANTHER ABC TRANSPORTER B FAMILY 77 679 - -
Ssu2g1830 713 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 77 679 - -
Ssu2g1830 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 674 IPR027417 -
Ssu2g1830 713 SMART AAA_5 480 676 IPR003593 -
Ssu2g1830 713 Gene3D ABC transporter type 1, transmembrane domain 120 438 IPR036640 GO:0005524|GO:0016021
Ssu2g1830 713 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 138 419 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu2g1830 713 SUPERFAMILY ABC transporter transmembrane region 125 435 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1830 Ssu-Chr2 69594340 69600405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1830 208 673 Calmodulin-binding Proteins AT2G36910 34.038 1.25e-66 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1830 - - gmx:100775951 1145.18