Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1819 ATGGCTTCTCTAACTCCACTTCTTTCTCTTGTCCTCACTCTTCTGACAAGTTCATGTGTAACTGTGTTTTCCTTTGAAGTTTCAATCAAAACAACTTACTTGAAACCTTTCAAATGCTCCCCTAAGATCAGCACATGCAATGCCTCACTCTACCATATAAGCTACGGTCTCAACATAGATGACATAGCCAACTTTTACTCTGTCAATACCTCCCAAGTCAAACCTATAATGCGTGGCGCCAATCAAGATTACCTTGTAACAGTACCTTGTTCTTGCAATAATTCCATTGACCTATATTTCTATGATACAACTTACAAGGTGAAGTTTAATGACACGTTTTTGGATATTAGCAACTTTATTTACAGTGGCCAAGCCTGGCCTATTAACGGAGAATTGGACCCAGCTGAGAAGTTAACAATACATCTTCCTTGTGGGTGTTCAGAAAAAAGTGACTCCCAAATTGTTGTCACGTATACAGTTCAGCGGAATGATACACCCACATCAATTGCTACTATGCTAAATGCTACGTTTGATGGCATGGTGAGTATGAACGAAGTTCTGGCTCAGAACCCCTCATTCATAGATGTTAGTTGGGTGTTATATGTTCCCAGGGAATTGAATGGATTACCACTTTCCAAAGGAAAAGAAAAGAAACACAAGTGGGAGATAATCATTGGCATCTTAGCGGGTGTGACATTACTTTCGATTATTACCTTGATCATTCTCATTGTCATTCTCAGGAGATCCAGAGCCTATGAAACCGCCAAAAATGATCCACGTGCTCTCTCTAAGAGATCAATTGCCAATAGAACTATTTCTGTAATGAACCGTGACTTTCATACAGAATATATTGAAGATGCAACACCATTTGAGTCAGAACGACCAGTAATTTATACTCTAGAGGATATTGAAGATGCTACGAATAACTTCGATGAAACCCGAAGGATTGGAGTAGGTGGATACGGTAGTGTGTATGTCGGAATGTTAGAAGAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCATATTAACATTGTGGAGTTGTTGGGATATGCAAGTGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGAACATCTTCATGATCCATTACTGAAAGGTCACCAGCCTCTTTCATGGTGTGCTAGGTCTCAAATTGCACTGGATGCGGCAAAAGGTCTTGAATACATACATGATTATACAAAAGCACGATATGTGCACCGTGATATAAAAACTAGTAATATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTAGCAGATTTCGGACTTGCAAAGTTAATAGAACGAACCAATGATGAAGAATTCATAGCAACCAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACTATAAAAACCGATGTATTTGCATTTGGTGTGGTTCTGTCAGAGTTGATAACAGGGAAACGAGCACTATTTCGTGACAACCAAGAAGCCAACAATATGAAATCGCTTATTACAGTTGTTGACCAAATATTCAAAGATGATGACCCAGAGACTTTTTTAGCTGATGCCATAGATGGGAATCTTCAACGTAGCTATCCTATGGAAGATGTCTACAAGATGGCAGAACTAGCTCATTGGTGCTTACGCGAAGATCCAAACGACAGGCCTGAGATGAGGGAGATCGTAGTGCCATTGTCACAGATTGTGATGTCCTCCATAGAATGGGAAGCATCACTAGGTGGAGACAGCCTGGTCTTCAGCGGGGTATTTGATGGAAGATGA 1845 0.4054 MASLTPLLSLVLTLLTSSCVTVFSFEVSIKTTYLKPFKCSPKISTCNASLYHISYGLNIDDIANFYSVNTSQVKPIMRGANQDYLVTVPCSCNNSIDLYFYDTTYKVKFNDTFLDISNFIYSGQAWPINGELDPAEKLTIHLPCGCSEKSDSQIVVTYTVQRNDTPTSIATMLNATFDGMVSMNEVLAQNPSFIDVSWVLYVPRELNGLPLSKGKEKKHKWEIIIGILAGVTLLSIITLIILIVILRRSRAYETAKNDPRALSKRSIANRTISVMNRDFHTEYIEDATPFESERPVIYTLEDIEDATNNFDETRRIGVGGYGSVYVGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVSNGSLSEHLHDPLLKGHQPLSWCARSQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLIERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQEANNMKSLITVVDQIFKDDDPETFLADAIDGNLQRSYPMEDVYKMAELAHWCLREDPNDRPEMREIVVPLSQIVMSSIEWEASLGGDSLVFSGVFDGR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1819 614 ProSiteProfiles LysM domain profile. 156 202 IPR018392 -
Ssu2g1819 614 SUPERFAMILY Protein kinase-like (PK-like) 293 584 IPR011009 -
Ssu2g1819 614 Gene3D LysM domain 148 207 IPR036779 -
Ssu2g1819 614 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 16 614 - -
Ssu2g1819 614 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Ssu2g1819 614 Gene3D Transferase(Phosphotransferase) domain 1 382 599 - -
Ssu2g1819 614 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 614 IPR044812 GO:0019199|GO:0045087
Ssu2g1819 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Ssu2g1819 614 Gene3D Phosphorylase Kinase; domain 1 289 381 - -
Ssu2g1819 614 ProSiteProfiles Protein kinase domain profile. 310 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1819 614 SMART serkin_6 310 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1819 614 Pfam Protein kinase domain 311 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1819 614 SUPERFAMILY LysM domain 156 203 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1819 Ssu-Chr2 69360807 69365469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1819 290 614 Receptor kinase-like Gene Family AT1G51940 52.266 4.65e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu2g1819 Pkinase 4.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1819 - - gmx:100800907 1028.47