Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1812 ATGTTGCACAGAAACAATCTATTGCTTCTTCCAACTTCAATGTCCCTTGCATCGTTTCTGCTCATCTTCCTTTGTTATGATGCACTTCCTGCTCTTGCTGATCCAAGAGCCACAGAGGCAGCAGGGCTGTGCACCAGTGGAACAAGATCATTGCCTCAGCGACAAACTTTCGTAGCAAACTTCTATGATGCCTTGGAAGGCTTAACCGTTTTGGTTCCAAGGCAAAGGTATGGTCTTGTTGTTAAAGGGACTACTCAAAATACCACTGTCTATGCTTTTGGTGAGTGCATGAAAGATCTTTCCAAACCAGATTGCGATGTCTGCTTTGCACAGTGCAAGACGCGTGTCTTTAGTTGCCCTCCATTTCGGGCAGGCATTAATGGTGGCAGGATCTTCTTTGATGGGTGCTATCTTAGGTATGATGGCTACAAATTTACCAATGAGAGTGTCAGTCCTCAGGACATGACTGTTTGTGGAAATGAAGATTTTAGTGGGAATTGGAGTGTTTACAAGGCCAATGCTGTGGAGTTGGTGAGAGATTTGAGCATTGAAGCACCAAAGAATGAAGGGTTCTTTGTGGGGTATGTGAGTCGAGGGAATGTGACTGTTTATGGGTTGGCTCAATGCTGGAAGTATGTGAATGGCAGTGCCTGTCAGAACTGTTTGGCTGAAGCTGTCACTAGGATTGATTCATGTGCTCCAAAAGAAGAAGGGAAGGCATTGAATGCTGGGTGTTACTTGAGGTATTCCACACGCAATTTCTATAGTAATTCGAGCAACATTAATGCCCCTCAATTAAATCAAGGAAATAAAAATCTTGCTATAATTGTGGCTGCATCATCTGCTTCCCTGGCTCTTCTGCTGATTGTTGCAACTGTGATTTTCTTTGTGAGGACAAATTTACTGAAGCGAAGGAGAGAAAGAAGACGAGTTGGTGCACTTTGGGACTCGGTGAACAAGTCCAAACTAAATATGCCATATGAAATTCTAGAAAAAGCCACAGATTACTTCAGTGATTCCAATAAGCTAGGAGAAGGGGGATCAGGATCAGTTTATAAAGGAACTCTGCCATGTGGAACTATAGTGGCTATAAAAAGGCTTAGTTTTAACACATCACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGATCAGTGGCATTCATCACAAAAATCTAGTGAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATTCGTACCTAATCAAAGCCTCTATGATCACCTATCTGTTGGAAAGAATTCTCAACCGTTGACATGGGAAGTCAGACGTAAAATCATATTGGGAACGGCAGAGGGCTTGGCCTATCTTCATGAGGAATCACAGAGAATCATTCATAGAGATATCAAATTAGGCAACATTCTCATTGATGATAACTTCACACCAAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGACAAGTCTCATCTTAGCACAGCCATTTGTGGCACATTGGGTTATATGGCCCCAGAGTATGTAGTTCTAGGGAAGTTAACTGAGAAAGCAGATGTCTACAGTTTTGGGGTTCTAATTATGGAAATTATATCTGGCAAAAAAAGCAAATCCTTCGTTCAAAATTCATATTCCATCGTACACACGGTCTGGAGCCTTTATGGATCAAACAGGCTATGTGACATTGTGGATCCAATCCTAGTGGGAAATTATCCAGCAGAGGAAGCATGCAAACTCCTTAAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGCTTAGACCACCAATGTCAGTAGTTGTGAAAATGATTAACAACAATCATGAAATTACTCAGCCAACACAACCACCCTTTCTTAATTGTAGTAGTGCAGAATTCAGCAAATCTATTTCACCAGGAGAGAGTTTTGAGCCTAGATCCTACACTCGGTCTTCAGACGGCGGCATGACCGAAAGTCTGATCGAGCATAAATGGGTTACGGTATAA 1986 0.4199 MLHRNNLLLLPTSMSLASFLLIFLCYDALPALADPRATEAAGLCTSGTRSLPQRQTFVANFYDALEGLTVLVPRQRYGLVVKGTTQNTTVYAFGECMKDLSKPDCDVCFAQCKTRVFSCPPFRAGINGGRIFFDGCYLRYDGYKFTNESVSPQDMTVCGNEDFSGNWSVYKANAVELVRDLSIEAPKNEGFFVGYVSRGNVTVYGLAQCWKYVNGSACQNCLAEAVTRIDSCAPKEEGKALNAGCYLRYSTRNFYSNSSNINAPQLNQGNKNLAIIVAASSASLALLLIVATVIFFVRTNLLKRRRERRRVGALWDSVNKSKLNMPYEILEKATDYFSDSNKLGEGGSGSVYKGTLPCGTIVAIKRLSFNTSQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEFVPNQSLYDHLSVGKNSQPLTWEVRRKIILGTAEGLAYLHEESQRIIHRDIKLGNILIDDNFTPKIADFGLARLFPEDKSHLSTAICGTLGYMAPEYVVLGKLTEKADVYSFGVLIMEIISGKKSKSFVQNSYSIVHTVWSLYGSNRLCDIVDPILVGNYPAEEACKLLKIGLLCAQASAELRPPMSVVVKMINNNHEITQPTQPPFLNCSSAEFSKSISPGESFEPRSYTRSSDGGMTESLIEHKWVTV 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1812 661 ProSiteProfiles Protein kinase domain profile. 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1812 661 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Ssu2g1812 661 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 648 - -
Ssu2g1812 661 CDD STKc_IRAK 343 606 - -
Ssu2g1812 661 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 648 - -
Ssu2g1812 661 SUPERFAMILY Protein kinase-like (PK-like) 322 633 IPR011009 -
Ssu2g1812 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Ssu2g1812 661 SMART serkin_6 337 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1812 661 Gene3D - 40 145 IPR038408 -
Ssu2g1812 661 Gene3D - 153 254 IPR038408 -
Ssu2g1812 661 Pfam Salt stress response/antifungal 44 141 IPR002902 -
Ssu2g1812 661 Pfam Salt stress response/antifungal 162 251 IPR002902 -
Ssu2g1812 661 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
Ssu2g1812 661 Gene3D Phosphorylase Kinase; domain 1 298 412 - -
Ssu2g1812 661 ProSiteProfiles Gnk2-homologous domain profile. 39 145 IPR002902 -
Ssu2g1812 661 MobiDBLite consensus disorder prediction 629 648 - -
Ssu2g1812 661 Pfam Protein kinase domain 338 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1812 661 ProSiteProfiles Gnk2-homologous domain profile. 151 254 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1812 Ssu-Chr2 69052510 69055449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1812 30 501 Receptor kinase-like Gene Family AT1G70530 57.806 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g1812 Pkinase 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1812 - - gmx:100802190 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1812 2 69052510 69055449 Ssu2g1812 2 69052510 69055449 ECH
Ssu2g1812 2 69052510 69055449 Ssu5g1103 5 35256700 35270842 PCT