Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1811 ATGAAGAAACTagtctctctcatctcttttcaATGCAACTTTTTCCTTGTCATCAAGTTACTACTACTATCAGAGACTGTAATGGCAGAACCAAGGGCCAAGACAGTCCTAATAACATGTGGCCACGAACGAGAGCACAACACTAGTATCTTTGTTCCAAATTTTGTTGCAACTATGGAGGAGATCAGTGATGAGATGCGCAAAACTGGCTTCGGCACAGCAGTTGTGGGGACAGGACCTGACACTAACTATGGCCTGGCCCAGTGTTATGGAGATCTTTCATTACTTGACTGTGTATTATGCTATGCTGAGGCACGCACGGTTCTTCCTCAGTGCTTCCCTTATAATTCTGGTCGCATTTTCCTTGATGGTTGCTTCATGAGGGCTGAGAATTATAGTTTCTTTAATGAGCACACGGGACCAGGAGACAGAGCTATGTGTGGGAACACAACCAAGAAGAACTCAAGTTTTCAAGCAGCAGCAAAGCAGGCAGTTTTAAGAGCAGTTCAGGATGCACCCAACAACAAAGGATATGCCAGAGGGAATGTTGCTGTGGCAGGAGCAACTAACCAAACTGTTCATGTTCTGGCTGATTGTTGGAGGACACTGGACCAAAGTTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCCATATTGGGATGCTTACCTTGGTCAGAAGGGCGAGCACTGAACACCGGGTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAGCAAGAAAATGGGAGTTCAAGAGGTAATGTGGTAATGATAGTGGTTGCAGTAGTCAGTTCGGTGATTGTTTCGTTGGTTGGAGTGACTATTGGAGTCTATATATGGAAACAAAGATACATTCAAAAGAAACGAAGAGGTTCAAACGATGCAGAAAAGTTAGCAAAAACACTTCAGAACAATAGCTTGAACTTCAAGTACTCTACATTGGAAAAGGCTACAGGatcttttcatgaaaataaCAAGTTAGGGCACGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATAAAGAGGTTATACTTCAACAACAGACATAGAGCAGCTAATTTCTACAACGAAGTCAACATAATTAGTGGTGTGGAACACAAGAATCTGGTCAGACTGGGGTATATGGCTCCTGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGCAGACGTATATAGTTTTGGAGTGTTGCTGCTAGAGATAGTTACTGGTAGACAGAACAACAGAAGCAAAGCATCAGAGTATTCAGACAGCTTAGTTACAGTGGCATGGAAGCATTTTCAGGCAGGGACTGCTGAACAATTATTTGATCCAAATCTAGAGTGGCAGGAAGACACAAATAGCAACGTTAAGGACGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGCCCCTTCTTTACGACCAATCATGTCAAAGGCACTGCAGATGCTAACAAAGAAGGAGGAGCATCTTGTCGCTCCCTCTAATCCACCCTTCCTAGATGAGAGTACCATGGAACTTAATGACACAAGTGGTGACCCATTTTATCCTCTTAATGCAGCTGATTCAATTGCTACTATGTCCCATAGCTCTTTTTATCCCAGGTGA 1635 0.4226 MKKLVSLISFQCNFFLVIKLLLLSETVMAEPRAKTVLITCGHEREHNTSIFVPNFVATMEEISDEMRKTGFGTAVVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNSGRIFLDGCFMRAENYSFFNEHTGPGDRAMCGNTTKKNSSFQAAAKQAVLRAVQDAPNNKGYARGNVAVAGATNQTVHVLADCWRTLDQSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSRGNVVMIVVAVVSSVIVSLVGVTIGVYIWKQRYIQKKRRGSNDAEKLAKTLQNNSLNFKYSTLEKATGSFHENNKLGHGGFGTVYKGVLADGREIAIKRLYFNNRHRAANFYNEVNIISGVEHKNLVRLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKASEYSDSLVTVAWKHFQAGTAEQLFDPNLEWQEDTNSNVKDEILRVVHIGLLCTQEAPSLRPIMSKALQMLTKKEEHLVAPSNPPFLDESTMELNDTSGDPFYPLNAADSIATMSHSSFYPR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1811 544 ProSiteProfiles Protein kinase domain profile. 324 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1811 544 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Ssu2g1811 544 Pfam Salt stress response/antifungal 46 132 IPR002902 -
Ssu2g1811 544 Gene3D - 144 244 IPR038408 -
Ssu2g1811 544 Gene3D - 33 134 IPR038408 -
Ssu2g1811 544 Gene3D Transferase(Phosphotransferase) domain 1 386 502 - -
Ssu2g1811 544 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Ssu2g1811 544 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 383 - -
Ssu2g1811 544 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 383 525 - -
Ssu2g1811 544 SUPERFAMILY Protein kinase-like (PK-like) 318 498 IPR011009 -
Ssu2g1811 544 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Ssu2g1811 544 Pfam Protein kinase domain 324 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1811 544 Pfam Protein tyrosine and serine/threonine kinase 384 426 IPR001245 GO:0004672|GO:0006468
Ssu2g1811 544 SMART serkin_6 324 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1811 544 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Ssu2g1811 544 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 9 383 - -
Ssu2g1811 544 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 383 525 - -
Ssu2g1811 544 Gene3D Phosphorylase Kinase; domain 1 284 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1811 Ssu-Chr2 69036765 69039781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1811 383 544 Receptor kinase-like Gene Family AT1G70520 65.854 7.02e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu2g1811 PK_Tyr_Ser-Thr 4.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1811 - - gmx:100804094 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1103 5 35256700 35270842 Ssu2g1811 2 69036765 69039781 PCT