Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1809 ATGAAGGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTCGGGGCGCCTCCGGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGGGCGACTTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGATATGCTGGTGAAGTATAAATCCGACTTGGCTCGCCCTTTTGATGAAGCAACCACCTTCCTCAATAAGATCGAAATGCAGCTCAGCCATCTCTGCACCGGCGCTTCCGGTTCCACCCTTTCTGATGATGGGGGTGTATCTTCGGACGAAGATTTTAGTACCGGAGATGGTGATGCTCAAGATGGGCAATCAAAGGGCGAAGATCGTGAGCTGAAGGATAGGCTTTTACGTAAGTTTGGGAGTCACATTGGTACTTTGAAACTGGAGttttcaaagaagaaaaagaagggtaAGCTCCCGAAGGAAGCAAGACATATGTTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCCAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCGTCCGAGAATATGCAGTTTTCTATGATGGAAAATCTTAACGGACGATTCCTTGCGGATGAATGA 723 0.4689 MKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKGDFVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASGSTLSDDGGVSSDEDFSTGDGDAQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARHMLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLADE 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1809 240 MobiDBLite consensus disorder prediction 107 137 - -
Ssu2g1809 240 Pfam Homeobox KN domain 177 216 IPR008422 GO:0003677|GO:0006355
Ssu2g1809 240 SMART ELK_2 137 158 IPR005539 GO:0003677
Ssu2g1809 240 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 1 239 - -
Ssu2g1809 240 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 239 - -
Ssu2g1809 240 CDD homeodomain 169 221 IPR001356 GO:0003677
Ssu2g1809 240 ProSiteProfiles ELK domain profile. 137 157 IPR005539 GO:0003677
Ssu2g1809 240 SMART KNOX1_2 1 43 IPR005540 GO:0003677|GO:0005634
Ssu2g1809 240 Pfam KNOX1 domain 1 42 IPR005540 GO:0003677|GO:0005634
Ssu2g1809 240 ProSiteProfiles 'Homeobox' domain profile. 157 220 IPR001356 GO:0003677
Ssu2g1809 240 SUPERFAMILY Homeodomain-like 158 229 IPR009057 -
Ssu2g1809 240 Pfam ELK domain 137 158 IPR005539 GO:0003677
Ssu2g1809 240 Gene3D - 156 230 - -
Ssu2g1809 240 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Ssu2g1809 240 Pfam KNOX2 domain 53 99 IPR005541 GO:0003677|GO:0005634
Ssu2g1809 240 SMART KNOX2_2 49 100 IPR005541 GO:0003677|GO:0005634
Ssu2g1809 240 SMART HOX_1 159 224 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1809 Ssu-Chr2 69012579 69020803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1809 1 240 Homeobox Transcription Factor Family AT1G23380 75.102 2.39e-127 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu2g1809 KNOX2 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1809 - - gmx:100794719 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1809 2 69012579 69020803 Ssu2g1809 2 69012579 69020803 ECH
Ssu2g1809 2 69012579 69020803 Ssu5g1102 5 35241689 35249308 PCT