Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1806 ATGCCTAAGGGGTTGGGGTGgggtctattttattttatttttttggttaatcaattttctttttatttgtgtgCTGGAAATACAAGAGAATTTCCAGATGAAGGTTCTTACCCTCTTCTGTTTGTTCCTCGAACAGTTGTAGCTCTGATGGCCATAAAGAATGACTTGATTGACCCTCACAATGTCCTGGAGAATTGGGATATTAATTCTGTTGATCCATGTAGCTGGAGGATGATTACGTGTTCCTCAGATGGCTATGTTTCTGCATTGGGGTTGCCTAGTCAGAACTTGTCTGGTGCACTATCTCCCGGAATTGGAAACCTTACTAACTTACAATCTGTGTTGCTTCAGAATAATGCAATTTCTGGCCGGATTCCTGCTGCAATAGGAAACTTGGAAAAGCTTCAGACCCTTGATCTTTCCACTAATGCATTTAATGGTGAGATGCCCTATTCTTTGGGAGGCCTCAAGAACCTGAATTATCTGCGGTTAAATAATAACAGCCTTACAGGATCCTGCCCTCAGTCTCTTAGCAACATTGAAGGTCTAACCCTTGTggacctATCCTACAACAATCTGAGTGGTTCCTTGCCAAGGATATCAGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGCCCAAAAGCAAACAACTGTTCTACTGTTTTACCAGAGCCACTTTCCTTCCCTCCAGATGCACTAAGAGTCCAATCAGACTCTGGTAAAAAAAGCCATCATGTGGCACTTGCTTTTGGTGCAAGTTTTGGTGCTGCTTTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGGTATAGACGCAACCAGCAGATATTCTTTGATGTCAATGAGCATTACGATCCAGAGGTGCGCCTTGGTCATTTAAAACGGTATTCATTCAAAGAGCTTCGAGCTGCAACAGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGTGGCTTTGGAATAGTTTACAAGGCATGCTTGAATGATGGGTCTGTTGGGGCTGTTAAAAGGTTAAAGGACTACAATGCAGCTGGTGGTGAGATCCAATTTCAGACAGAAGTTGAGACCATAAGTTTGGCCGTCCACCGGAATCTTCTGAGGCTTTCAGGGTTTTGCAGTACTCAGCATGAAAGACTCCTCGTTTATCCATATATGCCTAATGGCAGTGTAGCCTCTAGATTAAAAGATCATATTCATGGCCGGCCCGCGTTAGATTGGACGAGGCGGAAGAGAATATCTTTAGGTACAGCTAGAGGGTTGGTTTACTTGCATGAGCAATGTGACCCTAAAATTATTCACCGTGATGTCAAAGCAGCCAACATATTGCTAGATGAAGACTTTGAAGCTGTTGTTGGTGATTTTGGTTTAGCTAAGCTTCTGGATCATAGAGATTCCCATGTGACCACTGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAGTACCTATCCACTGGCCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGCATCTTGCTTCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCAAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTGGATAAAGATCTAAAGGGAAACTTTGATCTGATTGAATTAGAAGAAATGGTTCAGGTTGCACTCTTGTGTACTCAATTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTAGCTGAAAGATGGGAGGCCTCACAGAGGATTGAAACACCAAGGTTCCGGTCTTGTGAGAACCCCCCTCAAAGATATTCAGATTTAATAGAGGAATCTTCACTCATAGTTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1911 0.4228 MPKGLGWGLFYFIFLVNQFSFYLCAGNTREFPDEGSYPLLFVPRTVVALMAIKNDLIDPHNVLENWDINSVDPCSWRMITCSSDGYVSALGLPSQNLSGALSPGIGNLTNLQSVLLQNNAISGRIPAAIGNLEKLQTLDLSTNAFNGEMPYSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSTVLPEPLSFPPDALRVQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKACLNDGSVGAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMPNGSVASRLKDHIHGRPALDWTRRKRISLGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCENPPQRYSDLIEESSLIVEAMELSGPR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1806 636 Gene3D Transferase(Phosphotransferase) domain 1 390 605 - -
Ssu2g1806 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Ssu2g1806 636 Pfam Leucine rich repeat N-terminal domain 48 82 IPR013210 -
Ssu2g1806 636 SUPERFAMILY Protein kinase-like (PK-like) 290 587 IPR011009 -
Ssu2g1806 636 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Ssu2g1806 636 SMART serkin_6 313 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1806 636 Pfam Leucine rich repeat 109 169 IPR001611 GO:0005515
Ssu2g1806 636 SUPERFAMILY L domain-like 43 212 - -
Ssu2g1806 636 PANTHER PROTEIN NSP-INTERACTING KINASE 3 45 636 - -
Ssu2g1806 636 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 45 636 - -
Ssu2g1806 636 Gene3D Ribonuclease Inhibitor 45 223 IPR032675 -
Ssu2g1806 636 Pfam Protein kinase domain 314 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g1806 636 ProSiteProfiles Protein kinase domain profile. 313 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1806 Ssu-Chr2 68930171 68934809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1806 78 636 Receptor kinase-like Gene Family AT1G60800 76.532 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu2g1806 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1806 - - gmx:100806943 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1806 2 68930171 68934809 Ssu2g1806 2 68930171 68934809 ECH