Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1790 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTACGTACAATGTGGATTCTGTACAACCATTTTAATGGTAAGCGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTCCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGGTGACCTATTCTGATTGTGAGGAAGAGGATGTCATTCCAAAGAGTAATGTCGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATTAAACAAGAGATTAAAAGGCTAAAGACTGAAAATCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCATGACTCCCAAGTGGACCCTCCTAAAGCTGAGGTCAATGAAGAAGAAGGTCAAGGTTTCCGTGGAAGAAAGGTCCAAAGGAATTCCATCTTGGAAAGGACACCGTTTGAGTGA 651 0.4332 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKAPFVPFHLLASLSHLEPKESSPEEDANKTLNSHSASMVTYSDCEEEDVIPKSNVVNKPPEKRQRTPSAYNCFIKQEIKRLKTENPDMAHKEAFSTAAKNWANFPPTQCKGDEESCSQTDQLVDHDSQVDPPKAEVNEEEGQGFRGRKVQRNSILERTPFE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1790 216 PANTHER AXIAL REGULATOR YABBY 4 1 179 - -
Ssu2g1790 216 SUPERFAMILY HMG-box 108 162 IPR036910 -
Ssu2g1790 216 MobiDBLite consensus disorder prediction 181 209 - -
Ssu2g1790 216 PANTHER PROTEIN YABBY 6-RELATED 1 179 IPR006780 GO:0007275
Ssu2g1790 216 MobiDBLite consensus disorder prediction 160 216 - -
Ssu2g1790 216 Gene3D High mobility group box domain 105 176 IPR036910 -
Ssu2g1790 216 MobiDBLite consensus disorder prediction 165 180 - -
Ssu2g1790 216 Pfam YABBY protein 11 163 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1790 Ssu-Chr2 68676771 68678681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1790 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 58.696 1.03e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu2g1790 YABBY 1.9e-61 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1790 K25796 - gmx:100804172 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1790 2 68676771 68678681 Ssu2g1790 2 68676771 68678681 ECH
Ssu2g1790 2 68676771 68678681 Ssu5g1093 5 34639781 34641700 PCT