Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1767 ATGGGCCAACAGCCAACTAAAGGAACAGGGCTATTGGGCACTAGCCGGACAAAATTTTTTCACGTCTATGATCCGAAACACAAACGGGTCGGATCGCCGGATACTAACGTCCCCGGCGGTTCATCCATGTTTGAACGTTGCTCCCTCTACCCTTCTCCCTTCGCTCATCACTCTCTCCAACGCCGTTTCAAATTTCCACACAGATTCCTCCCTTGCAACAAGCGAAATGCGAGAAACGCGATTCGCTTGACCCGTCTTCTCCAGCCCTTCCTCCATGAAATCCGAGACCACCATTCGGGTCTTCCTGACCCGGCAATGCTAAGCTTGTCGGAGCTCCATCTAACCTTCCAGAAGcttcttttccttcttgaaGACCTTGCCCGCGGAGGTGCCAAGCTTTATATGTTAATGGAATCGGATCGGGTCGCCACTCAATTTCGGGTCGTGTCCAGATCCGTGGCCACTGCTTTGGACGTTTTCCCCTTCGGTTCGGTGGATGTCTCTGAGGAAACCAAAGAGCATGTTTTGCTGCTGAACGAGCAAGCGAGGAAGGCCGGGTTTGGATTCGAGCCCGAAGATAAACGGGCCGTGATGAGTGTTCTGTCGGGTTTGACCCGGTTTGAGAACCGGGTTGCTCCGGATGAGGGTGATCTGAAGTGGGTTCTTGAGTATATTGGGGTTAAAAAGTGGAGTGAGTGCAACAAAGAGGTGAAGTTTTTGGAGGGTGAAATTGGGTTTGAGTGGTTGAATGAGGGGAAGAGGAAAGTGGGTTTTTTGAGTAGTTTGATGGGGTTCATGAGTTATTGTAGATGCGTGGTGATGGAGGATGTTGATTGTGAAGAAAGTAACAAAAGAGAAAGTAGTGTTGAAAGTGAGATGAGTCCGAGTTTTCTTAACTCGGATGATTTTCGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCTGTGACAATAGAGACAGGTCACACCTATGACCGTTCTTCGATTCTCAAATGGTTCAAAAGTGGAAATGCGATGTGTCCCAAGACGGGTAAAAGGCTTAGCACCACTGAGTTGGTTCCCAACTTGGTGCTTCGGAGGTTGATTCAGCAATATTGTTATGCAAATGGCATAAGCATTCCCTTTGTTGATTCGGGTCGTGGGAATCGTGACATTACTAGGAGGGTGGAGCCCGGGAGTGTGGCAGCAGAGGGAGCAACGAGAGTGTTGGCTAGTTTTCTGAAAGGAAGGATTGAGAATGGAAGTGGGGAAGAGAAGAACCGAGGTGCGTTTGAGATAAGGCTTCTTTCCAAGGCAAGCGTTTTTAGTAGGTCTTGTTTGGTGGAAGCGGGTTTGGTTCCtcttttgttgttgtcattgaGGGATTCGTTGACTCAAGAGAATGCTGCAGCAGCTCTTCTAAACCTCTCAAAATGTGCAAAGAGCAGAAGTGTGATGGTTGAGAAATGGGGGTTGGAAGTGATTGTTGGGGTGTTAAGGAATGGGGTGAAGATTGAAGCACGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTGGTGCTGAGTATGGGAGCTTGATAGGGGAGGAGCCAGAAGCAATTTCATCATTGATAAGGCTAGTCAAAGATGGCTCTTATCGAAGCAAGAAAAATAGTTTGGTTGCATTGTTTGTCCTCCTAAAGCACCCTGAGAATCATAGGAGGGTGCTTGAAGGTGGAGTGGTAGTGCCTTTGTTAGTTGACATCTTAAAAGGGTGTGAAAAGGAAGACCTTATCACAGACTCGCTGGCAATTCTAGCAACCCTGGCAGAGAGGAGTGAGGGAATGCTAGCAATCCTTCATTGCGGGGTTTTGCATGTAGCTGTTGAAATTTTGAGTTGTTCCACTTCAAGGGTGGGGAAGGAGCACTGCGTGGCTTTGTTGCTTTCTTTGTCACTAAATGGTGGAGAGGATGTGGTTGCTCATTTAGTGAAGAGCCCTTCTCTTATGGGATCTTTGTATTCCCAACTCAGTGAAGGCACGTCTCGAGCTAGCAAGAAAGCCAGTGCTCTCATCAGGGTCCTCCAGGATTTTTATGAAGGGAGGTCCCCTGGCTTCAAGACTTCAGTTATTCCACAAGAGCAGTTCATTCATGTTCGGTAA 2118 0.4726 MGQQPTKGTGLLGTSRTKFFHVYDPKHKRVGSPDTNVPGGSSMFERCSLYPSPFAHHSLQRRFKFPHRFLPCNKRNARNAIRLTRLLQPFLHEIRDHHSGLPDPAMLSLSELHLTFQKLLFLLEDLARGGAKLYMLMESDRVATQFRVVSRSVATALDVFPFGSVDVSEETKEHVLLLNEQARKAGFGFEPEDKRAVMSVLSGLTRFENRVAPDEGDLKWVLEYIGVKKWSECNKEVKFLEGEIGFEWLNEGKRKVGFLSSLMGFMSYCRCVVMEDVDCEESNKRESSVESEMSPSFLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFKSGNAMCPKTGKRLSTTELVPNLVLRRLIQQYCYANGISIPFVDSGRGNRDITRRVEPGSVAAEGATRVLASFLKGRIENGSGEEKNRGAFEIRLLSKASVFSRSCLVEAGLVPLLLLSLRDSLTQENAAAALLNLSKCAKSRSVMVEKWGLEVIVGVLRNGVKIEARQHAAAVLFYLGAEYGSLIGEEPEAISSLIRLVKDGSYRSKKNSLVALFVLLKHPENHRRVLEGGVVVPLLVDILKGCEKEDLITDSLAILATLAERSEGMLAILHCGVLHVAVEILSCSTSRVGKEHCVALLLSLSLNGGEDVVAHLVKSPSLMGSLYSQLSEGTSRASKKASALIRVLQDFYEGRSPGFKTSVIPQEQFIHVR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1767 705 Gene3D - 381 688 IPR011989 -
Ssu2g1767 705 SMART Ubox_2 302 365 IPR003613 GO:0004842|GO:0016567
Ssu2g1767 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 373 IPR013083 -
Ssu2g1767 705 SUPERFAMILY RING/U-box 301 372 - -
Ssu2g1767 705 SMART arm_5 472 513 IPR000225 GO:0005515
Ssu2g1767 705 SMART arm_5 554 596 IPR000225 GO:0005515
Ssu2g1767 705 SMART arm_5 433 471 IPR000225 GO:0005515
Ssu2g1767 705 SUPERFAMILY ARM repeat 408 680 IPR016024 -
Ssu2g1767 705 Pfam U-box domain 301 369 IPR003613 GO:0004842|GO:0016567
Ssu2g1767 705 PANTHER U BOX DOMAIN-CONTAINING 57 694 - -
Ssu2g1767 705 ProSiteProfiles U-box domain profile. 298 372 IPR003613 GO:0004842|GO:0016567
Ssu2g1767 705 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 57 694 - -
Ssu2g1767 705 CDD RING-Ubox_PUB 303 345 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1767 Ssu-Chr2 68272340 68274909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1767 63 703 U-box Gene Family AT1G60190 45.372 2.13e-170 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1767 - - gmx:100795816 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1767 2 68272340 68274909 Ssu2g1767 2 68272340 68274909 ECH