Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1766 ATGGCTTCTTCAATGAGGATCTCAAGGCTGCTCTATTGTTCTGTTCTTCCTGCTTCCACTACTTCTTTGTTTTCTAGAGGTGCGAGTGGTGCCCTTGGTACACGGCTTAGTAAATACAGCACTGCTGCTGCCATTGAAGAACCAATTAAACCACCAGTTTATGTAAAACACACACAGCTCTTAATTGATGGAAAATTCGTTGATGCTGCTTCTGGCAAAACTTTTCCAACGTTGGACCCCAGGACAGGAGATGTGATTTCTCATGTTGCCGAGGGTGACCATGAAGATGTTGATCGAGCAGTTGCAGCTGCACGCAAAGCCTTCGACCATGGTCCTTGGCCAAAGATGACAGCCTATGAAAGACAAAGGATATTGCTGCGTGCTGCTGATCTGTTTGAAAAGCACAATGATGAGCTTGCTGCACTTGAGACATGGGACAATGGGAAGCCATATGAACAATCTGCTCAAATTGAAATTCCAATGCTGGTTCGCCTATTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGGCCATATCATGTGCAAACATTGCATGAACCCATTGGTGTTGCCGGTCAGATCATCCCATGGAACTTCCCTCTTCTCATGTTTGCCTGGAAGGTTGGGCCAGCATTGGCCTGTGGTAACACCATTGTTCTCAAAACAGCTGAGCAGACTCCATTATCTGCTTTGTATGCATCAAAGTTGCTTCATGAGGCTGGACTTCCTCCTGGTGTTCTGAATGTGATATCTGGCTTTGGCCCAACTGCTGGTGCAGCTATTGCTAGTCACATGGACATAGATaagCTTGCTTTCACTGGTTCAACAGATACTGGAAAGGTTGTCCTTGAACTGGCAGCTAGAAGTAATCTTAAGCCTGTAACTTTGGAGCTAGGTGGAAAATCCCCTTTTATTGTATGTGAAGATGCTGATGTAGATGAGGCCGTTGAACTAGCACACTTTGCATTATTCTTTAATCAGGGCCAATGCTGCTGTGCTGGGTCTAGAACATTTGTACACGAACGTGTATACGATGAATTTATTGAGAAAGCAAAGGCCCGTGCTTTGAAGCGTTCGGTTGGTGATCCGTTCAAGGGTGGAATAGAGCAAGGTCCTCAGGATGACATGCTGATTGCAAAGGAAGAGATCTTTGGCCCAGTGCAGTccatattaaaattcaaGGACCTTGGTGAGGTGATTCAAAGAGCAAATAAAACACACTATGGCCTTGCAGCAGGGGTGTTCACAAAAAACATTAACACAGCTAACACTTTGACTCGAGCATTGCGAGTTGGAACAGTGTGGGTGAACTGCTTTGATACATTTGATGCAGGCAATTCCCTTTGGAGGGTACAAGATGAGCGGGCAcggaagagaaaaaggagaataCAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTACATCCTTGAAGAACCCAGCTTGGCTTTGAACATCATTAGCTTTAGCTTAATTTGA 1506 0.4422 MASSMRISRLLYCSVLPASTTSLFSRGASGALGTRLSKYSTAAAIEEPIKPPVYVKHTQLLIDGKFVDAASGKTFPTLDPRTGDVISHVAEGDHEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLFEKHNDELAALETWDNGKPYEQSAQIEIPMLVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYASKLLHEAGLPPGVLNVISGFGPTAGAAIASHMDIDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDEAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFIEKAKARALKRSVGDPFKGGIEQGPQDDMLIAKEEIFGPVQSILKFKDLGEVIQRANKTHYGLAAGVFTKNINTANTLTRALRVGTVWVNCFDTFDAGNSLWRVQDERARKRKRRIQSQELLASEGCCYILEEPSLALNIISFSLI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1766 501 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 332 343 IPR016160 GO:0016491
Ssu2g1766 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 381 453 IPR016163 GO:0016620
Ssu2g1766 501 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 27 381 - -
Ssu2g1766 501 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 381 455 - -
Ssu2g1766 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 27 381 - -
Ssu2g1766 501 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 381 455 - -
Ssu2g1766 501 SUPERFAMILY ALDH-like 53 452 IPR016161 GO:0016491
Ssu2g1766 501 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 304 311 IPR029510 GO:0016491
Ssu2g1766 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 380 IPR016163 GO:0016620
Ssu2g1766 501 Pfam Aldehyde dehydrogenase family 66 381 IPR015590 GO:0016491
Ssu2g1766 501 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 307 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1766 Ssu-Chr2 68248172 68251987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1766 3 452 Aldehyde Dehydrogenase Gene Family AT3G48000 70.020 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1766 K00128 - gmx:100786773 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1766 2 68248172 68251987 Ssu2g1766 2 68248172 68251987 ECH
Ssu2g1766 2 68248172 68251987 Ssu5g1062 5 33509307 33511894 PCT