Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1762 ATGAATTTAGTACCATACAAATATATTGTCTGTAGGCAAGGAACTGCACAGATGGATAAAGCTTTGACTAGAGAAAGTGATTCTCCTCGTACGAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGGGTCAATCCCTGGAACATAGATGCTGTGGCTGATGCTCTCTATTCAGCTATTACTATGCATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACCGGTACATCAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATGGGCTTGGGACTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTTAGAAAATTGTCTGTTGACCACATTGTTTCAGCATACAAAAGAACAGGTAAAAGAGCCATATTTCTTGATTATGATGGTACTATTGTACCAAAATCTTCTATAAATAAAACCCCCAGCCCTGAAGTCATATCTGTGCTAAATGATATGTGTAACGATACCAAAAATACTGTGTTCATTGTGAGTGGAAGGGGAAGAGATTCTTTAAGTGATTGGTTTACTTCATGCAAAATGATTGGACTTGCAGCCGAACATGGATACTTTCTAAGGTGGAGTAAAGACTCTGAATGGGAAACCAGTCACTTGTCTCCTCATCTTGAGTGGAAGAAGATTGTGGAACCTGTCATGCAGTTGTATATGGAGGCAACTGATGGATCAAATATTGAAACTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGCTCTTGCCAAGCCAAAGAATTGTTAAATCATCTGGAAAGCGTACTTGCTAATGAACCTGCAGTTGTTATCAGGGGCCAGCATATTGTTGAAGTCAAGCCACAGGGGTTAAACAAGGGCTTGGTAGCTGAAAATGTTCTTTCCACTATGGTTAATAGTGGTAATCCACCAGATTTTGTGATGTGCGTTGGAGATGATATTTCTGATGAAGACATGTTTGACAGCATATTAAGGACAGTTTCATGCACATCATTGCCAGTAGCTCCAGAGATCTTTGCCTGCACTGTTGGTCAGAAACCTAGCAAGGCCAAATATTATCTTGATGATCCTGCTGATGTATTGAAGTTGCTTCAAGGCCTTGGTGCTTCATCTAACCCAAAGCCTAGGCATCTAGCACAATTCCAAATTTCTTTTGAGAGCACGGTTTGA 1260 0.4127 MNLVPYKYIVCRQGTAQMDKALTRESDSPRTSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADALYSAITMHDSEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTGKRAIFLDYDGTIVPKSSINKTPSPEVISVLNDMCNDTKNTVFIVSGRGRDSLSDWFTSCKMIGLAAEHGYFLRWSKDSEWETSHLSPHLEWKKIVEPVMQLYMEATDGSNIETKESALVWHHQDADPDFGSCQAKELLNHLESVLANEPAVVIRGQHIVEVKPQGLNKGLVAENVLSTMVNSGNPPDFVMCVGDDISDEDMFDSILRTVSCTSLPVAPEIFACTVGQKPSKAKYYLDDPADVLKLLQGLGASSNPKPRHLAQFQISFESTV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1762 419 Gene3D Glycogen Phosphorylase B; 1 87 - -
Ssu2g1762 419 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 407 IPR001830 GO:0003824|GO:0005992
Ssu2g1762 419 Pfam Glycosyltransferase family 20 1 103 IPR001830 GO:0003824|GO:0005992
Ssu2g1762 419 TIGRFAM T6PP: trehalose-phosphatase 149 395 IPR003337 GO:0003824|GO:0005992
Ssu2g1762 419 SUPERFAMILY HAD-like 150 397 IPR036412 -
Ssu2g1762 419 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 151 351 IPR006379 -
Ssu2g1762 419 CDD HAD_TPP 151 392 - -
Ssu2g1762 419 Pfam Trehalose-phosphatase 153 387 IPR003337 GO:0003824|GO:0005992
Ssu2g1762 419 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 407 - -
Ssu2g1762 419 Gene3D - 279 409 IPR023214 -
Ssu2g1762 419 Gene3D - 149 267 IPR023214 -
Ssu2g1762 419 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1762 Ssu-Chr2 68146171 68147650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1762 1 419 Trehalose Biosynthesis Gene Families AT1G23870 70.353 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1762 K16055 - gmx:100818536 820.846