Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1758 ATGTATAGGGTTCACTCTCAAATCCTTCACAGCAATGGTGCTAGCACCAACCCCCCTATTCTTACTCCATATTCTTCTTCTtacacttcttcttcttcccccTCAGTGCCTTATGTTTCTAACTACCAGAAACAATCAGCTCCATCCCCAACTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCGTAAAGCACAGGTCTTCTTCATCAATTTCCCAATCAAATAGGTACCCTGACATGTCTGAATCAGATGCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCCTTCATAGATGCTCTCCCAGTCTTCTTTTACAAAGAGATAATAGGCCTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAGCTGAGATTGCTGCCCATATGTAACCATGCTTTCCACATTGAATGCATAGACACATGGTTGTTGTCTAATTCAACTTGCCCTCTCTGTAGAGGGACTCTCTATTCACCAGGCTTTGCCTTTGAGAACTCAGTTTTTGACTTTGAAAGTCAATGTGAGGAAGATGGGGTGTcaggcagtggtggtggtggggttgGGGTTGATTCTGTTAACAAAACTACAGAAAGTCATATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCACTGCTAACAATGGAGATGGGGTGGAGAGAGGTGAAGGAGAGAGCAGTAGTGGTAATTTGGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCAAAGTGGAGGTGATGGAGGGAGCAGTGGCAGTATGAGACAACTGAAGGGAAGAGCAGCCCCAAATGGGAGTTCTTTCATTGATGGGGATGTTGAGGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGACAGGTTCATCAGATGCTCATTTCCATAATTCTACTGTCACTTCAACTTTGCCATGGATGAATAAAGCCAGAGGTACTTGA 1158 0.4111 MYRVHSQILHSNGASTNPPILTPYSSSYTSSSSPSVPYVSNYQKQSAPSPTSSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLVKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPICNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSVFDFESQCEEDGVSGSGGGGVGVDSVNKTTESHIVNGKRVFSVRLGKFRSTANNGDGVERGEGESSSGNLDVRRCYSMGSFQYVVADSDLRVALGQSGGDGGSSGSMRQLKGRAAPNGSSFIDGDVEGKKINIARKGESFSVSKIWQWSRKDKLTGSSDAHFHNSTVTSTLPWMNKARGT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1758 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 379 - -
Ssu2g1758 385 Pfam Ring finger domain 149 192 IPR001841 -
Ssu2g1758 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 197 IPR013083 -
Ssu2g1758 385 SMART ring_2 150 191 IPR001841 -
Ssu2g1758 385 MobiDBLite consensus disorder prediction 301 326 - -
Ssu2g1758 385 CDD RING-H2_PA-TM-RING 149 192 - -
Ssu2g1758 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 379 - -
Ssu2g1758 385 SUPERFAMILY RING/U-box 129 198 - -
Ssu2g1758 385 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1758 Ssu-Chr2 68076478 68077635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1758 77 363 C3H Transcription Factor Family AT2G18650 40.895 1.31e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1758 - - gmx:100805154 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1758 2 68076478 68077635 Ssu5g1053 5 33141363 33142211 PCT